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UniProtKB/Swiss-Prot entry Q9LKA3


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name MDHM2_ARATH
Primary accession number Q9LKA3
Secondary accession numbers None
Integrated into Swiss-Prot on February 21, 2006
Sequence was last modified on October 1, 2000 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 52)
Name and origin of the protein
Protein name Malate dehydrogenase 2, mitochondrial [Precursor]
Synonyms EC 1.1.1.37
mNAD-MDH 2
Gene name
OrderedLocusNames: At3g15020
ORFNames: K15M2.16
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/7.3.217; PubMed=10907853 [NCBI, ExPASy, EBI, Israel, Japan]
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.";
DNA Res. 7:217-221(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[3]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS], AND SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
DOI=10.1105/tpc.016055; PubMed=14671022 [NCBI, ExPASy, EBI, Israel, Japan]
Heazlewood J.L., Tonti-Filippini J.S., Gout A.M., Day D.A., Whelan J., Millar A.H.;
"Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.";
Plant Cell 16:241-256(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP000370; BAA97065.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY045592; AAK73950.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY093788; AAM10404.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_188120.1; -.
UniGene At.6661
3D structure databases
HSSP P00346; 1MLD. [HSSP ENTRY / PDB]
ModBase Q9LKA3.
Organism-specific databases
GeneFarm 2027; 159.
TAIR At3g15020; -.
Gene expression databases
GermOnline AT3G15020; Arabidopsis thaliana.
Ontologies
GO
GO:0005739; Cellular component: mitochondrion (inferred from direct assay from TAIR).
QuickGo view.
Family and domain databases
InterPro IPR001557; L-lactate/malate_DHase.
IPR001236; Lactate/malate_DHase.
IPR015955; Lactate_DHase/Glyco_Ohase_4_C.
IPR001252; Malate_DHase_AS.
IPR010097; Malate_DHase_NAD-dep_euk_g_bac.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.90.110.10; lact_mal_DH; 1.
G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR11540:SF1; MDH_euk_g_bac; 1.
Pfam PF02866; Ldh_1_C; 1.
PF00056; Ldh_1_N; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000102; Lac_mal_DH; 1.
TIGRFAMs TIGR01772; MDH_euk_gproteo; 1.
PROSITE PS00068; MDH; 1.
BLOCKS Q9LKA3.
Genome annotation databases
GeneID 820731; -.
GenomeReviews BA000014_GR; AT3G15020.
NMPDR fig|3702.1.peg.13650; -.
Other
ProtoNet Q9LKA3.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Complete proteome; Mitochondrion; NAD; Oxidoreductase; Transit peptide; Tricarboxylic acid cycle.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    22  22     Mitochondrion. 
CHAIN   23   341  319     Malate dehydrogenase 2, mitochondrial. PRO_0000224148
NP_BIND   36    42  7     NAD (By similarity). 
NP_BIND   145   147  3     NAD (By similarity). 
ACT_SITE   205   205        Proton acceptor (By similarity). 
BINDING   62    62        NAD (By similarity). 
BINDING   109   109        Substrate (By similarity). 
BINDING   115   115        Substrate (By similarity). 
BINDING   122   122        NAD (By similarity). 
BINDING   147   147        Substrate (By similarity). 
BINDING   181   181        Substrate (By similarity). 
BINDING   256   256        NAD (By similarity). 
Sequence information
Length: 341 AA [This is the length of the unprocessed precursor] Molecular weight: 35875 Da [This is the MW of the unprocessed precursor] CRC64: 38364CAE36712AE1 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFRSMIVRSA SPVKQGLLRR GFASESVPDR KVVILGAAGG IGQPLSLLMK LNPLVSSLSL 

        70         80         90        100        110        120 
YDIANTPGVA ADVGHINTRS QVSGYMGDDD LGKALEGADL VIIPAGVPRK PGMTRDDLFN 

       130        140        150        160        170        180 
INAGIVKNLS IAIAKYCPQA LVNMISNPVN STVPIAAEIF KKAGTYDEKK LFGVTTLDVV 

       190        200        210        220        230        240 
RARTFYAGKS DVNVAEVNVP VVGGHAGITI LPLFSQASPQ ANLSDDLIRA LTKRTQDGGT 

       250        260        270        280        290        300 
EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPNVVEC SFVQSTITEL PFFASKVRLG 

       310        320        330        340 
KNGVEEVLDL GPLSDFEKEG LEALKAELKS SIEKGIKFAN Q 

Q9LKA3 in FASTA format

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