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UniProtKB/Swiss-Prot entry Q9LIA8


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name UGDH1_ARATH
Primary accession number Q9LIA8
Secondary accession numbers Q8L8N1 Q944R8
Integrated into Swiss-Prot on December 4, 2007
Sequence was last modified on October 1, 2000 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 55)
Name and origin of the protein
Protein name Probable UDP-glucose 6-dehydrogenase 1
Synonyms UDP-Glc dehydrogenase 1
UDP-GlcDH 1
UDPGDH 1
EC 1.1.1.22
Gene name
Name: UGD1
OrderedLocusNames: At3g29360
ORFNames: MUO10_6, MUO10.18
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/7.3.217; PubMed=10907853 [NCBI, ExPASy, EBI, Israel, Japan]
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.";
DNA Res. 7:217-221(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.;
"Arabidopsis ORF Clone.";
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-393, AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M600429-MCP200; PubMed=17317660 [NCBI, ExPASy, EBI, Israel, Japan]
Benschop J.J., Mohammed S., O'flaherty M., Heck A.J.R., Slijper M., Menke F.L.H.;
"Quantitative phosphoproteomics of early elicitor signalling in Arabidopsis.";
Mol. Cell. Proteomics 6:1198-1214(2007).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP001309; BAB02581.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF424576; AAL11570.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY088902; AAM67208.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT021126; AAX22261.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK226539; BAE98678.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT029164; ABJ17099.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_001030792.1; -.
NP_189582.1; -.
UniGene At.22975
3D structure databases
HSSP P11759; 1MFZ. [HSSP ENTRY / PDB]
ModBase Q9LIA8.
Organism-specific databases
TAIR At3g29360; -.
Family and domain databases
InterPro IPR016040; NAD(P)-bd.
IPR017476; Nucleotide_sugar_DH.
IPR014027; UDP-Glc/GDP-Man_DHase_C.
IPR014026; UDP-Glc/GDP-Man_DHase_dimer.
IPR014028; UDP-Glc/GDP-Man_DHase_dimer-bd.
IPR001732; UDP-Glc/GDP-Man_DHase_N.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
G3DSA:3.40.50.1870; UDP-Glc/GDP-Man_DH_C; 1.
PANTHER PTHR11374; UDPG_MGDP_DH_Creg; 1.
Pfam PF00984; UDPG_MGDP_dh; 1.
PF03720; UDPG_MGDP_dh_C; 1.
PF03721; UDPG_MGDP_dh_N; 1.
Pfam graphical view of domain structure.
BLOCKS Q9LIA8.
Genome annotation databases
GeneID 822594; -.
GenomeReviews BA000014_GR; AT3G29360.
KEGG ath:AT3G29360; -.
NMPDR fig|3702.1.peg.15250; -.
Other
ProtoNet Q9LIA8.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; NAD; Oxidoreductase; Phosphoprotein.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   480  480     Probable UDP-glucose 6-dehydrogenase 1. PRO_0000312027
NP_BIND   3    20  18     NAD (By similarity). 
REGION   158   161  4     Substrate binding (By similarity). 
ACT_SITE   272   272        Nucleophile (By similarity). 
BINDING   33    33        NAD (By similarity). 
BINDING   38    38        NAD (By similarity). 
BINDING   90    90        NAD (By similarity). 
BINDING   128   128        NAD; via amide nitrogen (By similarity). 
BINDING   161   161        NAD (By similarity). 
BINDING   216   216        Substrate (By similarity). 
BINDING   269   269        Substrate; via amide nitrogen (By similarity). 
BINDING   275   275        NAD (By similarity). 
BINDING   335   335        Substrate (By similarity). 
BINDING   342   342        NAD (By similarity). 
MOD_RES   393   393        Phosphoserine. 
CONFLICT   12    12        V -> I (in Ref. 2; AAL11570). 
CONFLICT   178   178        G -> R (in Ref. 2; AAL11570). 
CONFLICT   193   193        N -> D (in Ref. 3; AAM67208). 
Sequence information
Length: 480 AA [This is the length of the unprocessed precursor] Molecular weight: 53173 Da [This is the MW of the unprocessed precursor] CRC64: D6281D20442CBADF [This is a checksum on the sequence]
        10         20         30         40         50         60 
MVKICCIGAG YVGGPTMAVI ALKCPDVEVA VVDISVPRIN AWNSDTLPIY EPGLDDVVKQ 

        70         80         90        100        110        120 
CRGKNLFFST DVEKHVREAD IVFVSVNTPT KTRGLGAGKA ADLTYWESAA RMIADVSVSD 

       130        140        150        160        170        180 
KIVVEKSTVP VKTAEAIEKI LTHNSKGIKF QILSNPEFLA EGTAIKDLFN PDRVLIGGRE 

       190        200        210        220        230        240 
TPEGFKAVQT LKNVYAHWVP EGQIITTNLW SAELSKLAAN AFLAQRISSV NAMSALCEAT 

       250        260        270        280        290        300 
GADVTQVSYA VGTDSRIGPK FLNSSVGFGG SCFQKDILNL VYICECNGLP EVAEYWKQVI 

       310        320        330        340        350        360 
KINDYQKSRF VNRVVSSMFN SVSNKKIAVL GFAFKKDTGD TRETPAIDVC KGLLEDKARL 

       370        380        390        400        410        420 
SIYDPQVTED QIQRDLSMNK FDWDHPLHLQ PMSPTTVKQV TVTWDAYEAT KDAHGICIMT 

       430        440        450        460        470        480 
EWDEFKNLDF QKIFDNMQKP AFVFDGRNIM NLQKLREIGF IVYSIGKPLD DWLKDMPAVA 

Q9LIA8 in FASTA format

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