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UniProtKB/Swiss-Prot entry Q9HA82


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LASS4_HUMAN
Primary accession number Q9HA82
Secondary accession numbers None
Integrated into Swiss-Prot on August 16, 2004
Sequence was last modified on March 1, 2001 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 62)
Name and origin of the protein
Protein name LAG1 longevity assurance homolog 4
Synonyms None
Gene name
Name: LASS4
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Embryo;
DOI=10.1038/ng1285; PubMed=14702039 [NCBI, ExPASy, EBI, Israel, Japan]
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human cDNAs.";
Nat. Genet. 36:40-45(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Lung;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AK022151; BAB13972.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC009828; AAH09828.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00002225; -.
RefSeq NP_078828.2; -.
UniGene Hs.515111
3D structure databases
ModBase Q9HA82.
PTM databases
PhosphoSite Q9HA82; -.
Organism-specific databases
GeneCards GC19P008180; -.
HGNC HGNC:23747; LASS4.
GenAtlas LASS4.
PharmGKB PA134915173; -.
Gene expression databases
ArrayExpress Q9HA82; -.
Bgee Q9HA82; -.
CleanEx HS_LASS4; -.
GermOnline ENSG00000090661; Homo sapiens.
Ontologies
GO
GO:0005789; Cellular component: endoplasmic reticulum membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0016021; Cellular component: integral to membrane (inferred from electronic annotation from UniProtKB-KW).
GO:0031965; Cellular component: nuclear membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0043565; Molecular function: sequence-specific DNA binding (inferred from electronic annotation from InterPro).
GO:0003700; Molecular function: transcription factor activity (inferred from electronic annotation from InterPro).
GO:0006355; Biological process: regulation of transcription, DNA-dependent (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR001356; Homeobox.
IPR017970; Homeobox_CS.
IPR016439; Longevity_assurance_LAG1_LAC1.
IPR006634; TLC.
Graphical view of domain structure.
Pfam PF03798; TRAM_LAG1_CLN8; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF005225; LAG1_LAC1; 1.
SMART SM00389; HOX; 1.
SM00724; TLC; 1.
SMART graphical view of domain structure.
PROSITE PS00027; HOMEOBOX_1; FALSE_NEG.
PS50071; HOMEOBOX_2; 1.
PS50922; TLC; 1.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE Q9HA82; -.
Genome annotation databases
Ensembl ENSG00000090661; Homo sapiens. [Contig view]
GeneID 79603; -.
Phylogenomic databases
HOGENOM Q9HA82; -.
HOVERGEN Q9HA82; -.
Other
NextBio 68638; -.
ProtoNet Q9HA82.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
DNA-binding; Endoplasmic reticulum; Homeobox; Lipid synthesis; Membrane; Nucleus; Polymorphism; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   394  394     LAG1 longevity assurance homolog 4. PRO_0000185512
TRANSMEM   32    52  21     Potential. 
TRANSMEM   140   160  21     Potential. 
TRANSMEM   179   199  21     Potential. 
TRANSMEM   209   229  21     Potential. 
TRANSMEM   260   280  21     Potential. 
TRANSMEM   304   324  21     Potential. 
DOMAIN   131   332  202     TLC. 
DNA_BIND   67   128  62     Homeobox. 
VARIANT   119   119  1     R -> Q (in dbSNP:rs17159388 [NCBI]). VAR_034065 
VARIANT   301   301  1     G -> S (in dbSNP:rs2288413 [NCBI]). VAR_019556 
VARIANT   366   366  1     A -> T (in dbSNP:rs36259 [NCBI]). VAR_019557 
Sequence information
Length: 394 AA [This is the length of the unprocessed precursor] Molecular weight: 46399 Da [This is the MW of the unprocessed precursor] CRC64: 67228829BDED2801 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLSSFNEWFW QDRFWLPPNV TWTELEDRDG RVYPHPQDLL AALPLALVLL AMRLAFERFI 

        70         80         90        100        110        120 
GLPLSRWLGV RDQTRRQVKP NATLEKHFLT EGHRPKEPQL SLLAAQCGLT LQQTQRWFRR 

       130        140        150        160        170        180 
RRNQDRPQLT KKFCEASWRF LFYLSSFVGG LSVLYHESWL WAPVMCWDRY PNQTLKPSLY 

       190        200        210        220        230        240 
WWYLLELGFY LSLLIRLPFD VKRKDFKEQV IHHFVAVILM TFSYSANLLR IGSLVLLLHD 

       250        260        270        280        290        300 
SSDYLLEACK MVNYMQYQQV CDALFLIFSF VFFYTRLVLF PTQILYTTYY ESISNRGPFF 

       310        320        330        340        350        360 
GYYFFNGLLM LLQLLHVFWS CLILRMLYSF MKKGQMEKDI RSDVEESDSS EEVAAAQEPL 

       370        380        390 
QLKNGAAGGP RPAPTDGPQS RVAGRLTNRH TTAT 

Q9HA82 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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