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UniProtKB/Swiss-Prot entry Q9BYB0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name SHAN3_HUMAN
Primary accession number Q9BYB0
Secondary accession number Q8TET3
Integrated into Swiss-Prot on July 26, 2002
Sequence was last modified on June 12, 2007 (Sequence version 2)
Annotations were last modified on    June 10, 2008 (Entry version 54)
Name and origin of the protein
Protein name SH3 and multiple ankyrin repeat domains protein 3
Synonyms Shank3
Proline-rich synapse-associated protein 2
ProSAP2
Gene name
Name: SHANK3
Synonyms: KIAA1650, PSAP2
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/990031; PubMed=10591208 [NCBI, ExPASy, EBI, Israel, Japan]
Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M., Buck D., Burgess J., Burrill W.D., Burton J., Carder C., Carter N.P., Chen Y., Clark G., Clegg S.M., Cobley V.E., Cole C.G., Collier R.E., Connor R., Conroy D., Corby N.R., Coville G.J., Cox A.V., Davis J., Dawson E., Dhami P.D., Dockree C., Dodsworth S.J., Durbin R.M., Ellington A.G., Evans K.L., Fey J.M., Fleming K., French L., Garner A.A., Gilbert J.G.R., Goward M.E., Grafham D.V., Griffiths M.N.D., Hall C., Hall R.E., Hall-Tamlyn G., Heathcott R.W., Ho S., Holmes S., Hunt S.E., Jones M.C., Kershaw J., Kimberley A.M., King A., Laird G.K., Langford C.F., Leversha M.A., Lloyd C., Lloyd D.M., Martyn I.D., Mashreghi-Mohammadi M., Matthews L.H., Mccann O.T., Mcclay J., Mclaren S., McMurray A.A., Milne S.A., Mortimore B.J., Odell C.N., Pavitt R., Pearce A.V., Pearson D., Phillimore B.J.C.T., Phillips S.H., Plumb R.W., Ramsay H., Ramsey Y., Rogers L., Ross M.T., Scott C.E., Sehra H.K., Skuce C.D., Smalley S., Smith M.L., Soderlund C., Spragon L., Steward C.A., Sulston J.E., Swann R.M., Vaudin M., Wall M., Wallis J.M., Whiteley M.N., Willey D.L., Williams L., Williams S.A., Williamson H., Wilmer T.E., Wilming L., Wright C.L., Hubbard T., Bentley D.R., Beck S., Rogers J., Shimizu N., Minoshima S., Kawasaki K., Sasaki T., Asakawa S., Kudoh J., Shintani A., Shibuya K., Yoshizaki Y., Aoki N., Mitsuyama S., Roe B.A., Chen F., Chu L., Crabtree J., Deschamps S., Do A., Do T., Dorman A., Fang F., Fu Y., Hu P., Hua A., Kenton S., Lai H., Lao H.I., Lewis J., Lewis S., Lin S.-P., Loh P., Malaj E., Nguyen T., Pan H., Phan S., Qi S., Qian Y., Ray L., Ren Q., Shaull S., Sloan D., Song L., Wang Q., Wang Y., Wang Z., White J., Willingham D., Wu H., Yao Z., Zhan M., Zhang G., Chissoe S., Murray J., Miller N., Minx P., Fulton R., Johnson D., Bemis G., Bentley D., Bradshaw H., Bourne S., Cordes M., Du Z., Fulton L., Goela D., Graves T., Hawkins J., Hinds K., Kemp K., Latreille P., Layman D., Ozersky P., Rohlfing T., Scheet P., Walker C., Wamsley A., Wohldmann P., Pepin K., Nelson J., Korf I., Bedell J.A., Hillier L.W., Mardis E., Waterston R., Wilson R., Emanuel B.S., Shaikh T., Kurahashi H., Saitta S., Budarf M.L., McDermid H.E., Johnson A., Wong A.C.C., Morrow B.E., Edelmann L., Kim U.J., Shizuya H., Simon M.I., Dumanski J.P., Peyrard M., Kedra D., Seroussi E., Fransson I., Tapia I., Bruder C.E., O'Brien K.P., Wilkinson P., Bodenteich A., Hartman K., Hu X., Khan A.S., Lane L., Tilahun Y., Wright H.;
"The DNA sequence of human chromosome 22.";
Nature 402:489-495(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 936-1741 (ISOFORM 2).
DOI=10.1093/dnares/8.1.1; PubMed=11258795 [NCBI, ExPASy, EBI, Israel, Japan]
Hirosawa M., Nagase T., Murahashi Y., Kikuno R., Ohara O.;
"Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping.";
DNA Res. 8:1-9(2001).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 963-1741 (ISOFORM 2).
TISSUE=Spleen;
Ohara O., Nagase T., Kikuno R., Okumura K.;
"The nucleotide sequence of a long cDNA clone isolated from human spleen.";
Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases.
[4]
CHROMOSOMAL TRANSLOCATION WITH APPL2.
DOI=10.1086/321293; PubMed=11431708 [NCBI, ExPASy, EBI, Israel, Japan]
Bonaglia M.C., Giorda R., Borgatti R., Felisari G., Gagliardi C., Selicorni A., Zuffardi O.;
"Disruption of the ProSAP2 gene in a t(12;22)(q24.1;q13.3) is associated with the 22q13.3 deletion syndrome.";
Am. J. Hum. Genet. 69:261-268(2001).
[5]
REVIEW.
PubMed=10806096 [NCBI, ExPASy, EBI, Israel, Japan]
Sheng M., Kim E.;
"The Shank family of scaffold proteins.";
J. Cell Sci. 113:1851-1856(2000).
[6]
INTERACTION WITH BAIAP2.
DOI=10.1006/mcne.2002.1201; PubMed=12504591 [NCBI, ExPASy, EBI, Israel, Japan]
Soltau M., Richter D., Kreienkamp H.-J.;
"The insulin receptor substrate IRSp53 links postsynaptic shank1 to the small G-protein cdc42.";
Mol. Cell. Neurosci. 21:575-583(2002).
[7]
INVOLVEMENT IN ASD, AND VARIANTS CYS-12; GLY-198; THR-224 AND CYS-300.
DOI=10.1038/ng1933; PubMed=17173049 [NCBI, ExPASy, EBI, Israel, Japan]
Durand C.M., Betancur C., Boeckers T.M., Bockmann J., Chaste P., Fauchereau F., Nygren G., Rastam M., Gillberg I.C., Anckarsaeter H., Sponheim E., Goubran-Botros H., Delorme R., Chabane N., Mouren-Simeoni M.-C., de Mas P., Bieth E., Roge B., Heron D., Burglen L., Gillberg C., Leboyer M., Bourgeron T.;
"Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders.";
Nat. Genet. 39:25-27(2007).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1159 AND SER-1163, AND MASS SPECTROMETRY.
TISSUE=Platelet;
DOI=10.1021/pr0704130; PubMed=18088087 [NCBI, ExPASy, EBI, Israel, Japan]
Zahedi R.P., Lewandrowski U., Wiesner J., Wortelkamp S., Moebius J., Schuetz C., Walter U., Gambaryan S., Sickmann A.;
"Phosphoproteome of resting human platelets.";
J. Proteome Res. 7:526-534(2008).
Comments
  • FUNCTION: Seems to be an adapter protein in the postsynaptic density (PSD) of excitatory synapses that interconnects receptors of the postsynaptic membrane including NMDA-type and metabotropic glutamate receptors via complexes with GKAP/PSD-95 and Homer, respectively, and the actin-based cytoskeleton. May play a role in the structural and functional organization of the dendritic spine and synaptic junction.
  • SUBUNIT: May homomultimerize via its SAM domain (By similarity). Interacts with DLGAP1/GKAP, MGLUR1A, MGLUR5 C-termini via its PDZ domain (By similarity). Interacts with HOMER1, HOMER2, HOMER3 and CCTN/cortactin SH3 domain (By similarity). Is part of a complex with DLG4/PSD-95 and DLGAP1/GKAP. Interacts with DBNL (By similarity). Interacts with BAIAP2.
  • SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cell junction, synapse (By similarity). Cell junction, synapse, postsynaptic cell membrane, postsynaptic density (By similarity). Note=Postsynaptic density of neuronal cells (By similarity).
  • ALTERNATIVE PRODUCTS: 2 named isoforms [FASTA] produced by alternative splicing.
    Name1
    Isoform IDQ9BYB0-1
    This is the isoform sequence displayed in this entry.
    Name2
    Isoform IDQ9BYB0-2
    Features which should be applied to build the isoform sequence: VSP_026160.
  • TISSUE SPECIFICITY: Expressed in the cerebral cortex and the cerebellum.
  • DISEASE: A chromosomal aberration disrupting SHANK3/PSAP2 is responsible for the clinical features of chromosome 22q13.3 deletion syndrome [MIM:606232]. Translocation t(12;22)(q24.1;q13.3) with APPL2/DIP13B. The phenotype is characterized by neonatal hypotonia, global developmental delay, normal to accelerated growth, absent to severely delayed speech, autistic behavior and minor dysmorphic features.
  • DISEASE: Defects in SHANK3 are a cause of autism spectrum disorders (ASD). ASD are characterized by impairments in reciprocal social interaction and communication as well as restricted and stereotyped patterns of interest and activities. ASD include forms with moderate to severe cognitive impairment and milder forms with higher cognitive ability (Asperger syndrome).
  • SIMILARITY: Contains 6 ANK repeats.
  • SIMILARITY: Contains 1 PDZ (DHR) domain.
  • SIMILARITY: Contains 1 SAM (sterile alpha motif) domain.
  • SIMILARITY: Contains 1 SH3 domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC000050; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
AC000036; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
AB051437; BAB33320.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK074038; BAB84864.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
UniGene Hs.149035
3D structure databases
SMR Q9BYB0; 731-794.
ModBase Q9BYB0.
PTM databases
PhosphoSite Q9BYB0; -.
Organism-specific databases
H-InvDB HIX0016621; -.
HGNC HGNC:14294; SHANK3.
GeneLynx SHANK3; Homo sapiens.
GenAtlas SHANK3.
HPA HPA003446; -.
MIM 606230; gene. [NCBI / EBI]
606232; phenotype. [NCBI / EBI]
Orphanet 48652; Monosomy 22q13.
PharmGKB PA37866; -.
GeneCards Q9BYB0.
HUGE KIAA1650.
Gene expression databases
ArrayExpress Q9BYB0; -.
CleanEx HS_SHANK3; -.
GermOnline ENSG00000099882; Homo sapiens.
Family and domain databases
InterPro IPR002110; ANK.
IPR001478; PDZ.
IPR001660; SAM.
IPR013761; SAM_type.
IPR001452; SH3.
IPR011511; SH3_2.
Graphical view of domain structure.
Gene3D G3DSA:1.25.40.20; ANK; 1.
G3DSA:1.10.150.50; SAM_type; 1.
Pfam PF00023; Ank; 5.
PF00595; PDZ; 1.
PF00536; SAM_1; 1.
PF07653; SH3_2; 1.
Pfam graphical view of domain structure.
PRINTS PR01415; ANKYRIN.
ProDom PD000066; SH3; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00248; ANK; 5.
SM00228; PDZ; 1.
SM00454; SAM; 1.
SM00326; SH3; 1.
SMART graphical view of domain structure.
PROSITE PS50297; ANK_REP_REGION; 1.
PS50088; ANK_REPEAT; 4.
PS50106; PDZ; 1.
PS50105; SAM_DOMAIN; 1.
PS50002; SH3; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q9BYB0.
Genome annotation databases
Ensembl ENSG00000099882; Homo sapiens. [Contig view]
Phylogenomic databases
HOGENOM Q9BYB0; -.
HOVERGEN Q9BYB0; -.
Other
SOURCE SHANK3; Homo sapiens.
ProtoNet Q9BYB0.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; ANK repeat; Cell junction; Chromosomal rearrangement; Coiled coil; Cytoplasm; Membrane; Phosphoprotein; Polymorphism; Postsynaptic cell membrane; Repeat; SH3 domain; SH3-binding; Synapse.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom    To Length Description FTId
CHAIN   1   1741  1741     SH3 and multiple ankyrin repeat domains protein 3. PRO_0000174675
REPEAT   148    178  31     ANK 1. 
REPEAT   182    211  30     ANK 2. 
REPEAT   215    245  31     ANK 3. 
REPEAT   249    278  30     ANK 4. 
REPEAT   282    311  30     ANK 5. 
REPEAT   315    345  31     ANK 6. 
DOMAIN   472    531  60     SH3. 
DOMAIN   572    666  95     PDZ. 
DOMAIN   1678   1741  64     SAM. 
COILED   1495   1515  21     Potential. 
MOTIF   1411   1417  7     SH3-binding (Potential). 
COMPBIAS   679    682  4     Poly-Pro. 
COMPBIAS   720    723  4     Poly-Ala. 
COMPBIAS   815    931  117     Pro-rich. 
COMPBIAS   1233   1350  118     Pro-rich. 
MOD_RES   122    122        Phosphotyrosine (By similarity). 
MOD_RES   375    375        Phosphoserine (By similarity). 
MOD_RES   557    557        Phosphotyrosine (By similarity). 
MOD_RES   566    566        Phosphotyrosine (By similarity). 
MOD_RES   783    783        Phosphoserine (By similarity). 
MOD_RES   1159   1159        Phosphoserine. 
MOD_RES   1163   1163        Phosphoserine. 
MOD_RES   1644   1644        Phosphoserine (By similarity). 
VAR_SEQ   1536   1544        Missing (in isoform 2). VSP_026160
VARIANT   12     12  1     R -> C. VAR_032804 
VARIANT   198    198  1     A -> G. VAR_032805 
VARIANT   224    224  1     A -> T. VAR_032806 
VARIANT   245    245  1     I -> T (in dbSNP:rs9616915 [NCBI]). VAR_032807 
VARIANT   300    300  1     R -> C. VAR_032808 
Sequence information
Length: 1741 AA [This is the length of the unprocessed precursor] Molecular weight: 186295 Da [This is the MW of the unprocessed precursor] CRC64: 0CC40F1F53E6F6D4 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MDGPGASAVV VRVGIPDLQQ TKCLRLDPAA PVWAAKQRVL CALNHSLQDA LNYGLFQPPS 

        70         80         90        100        110        120 
RGRAGKFLDE ERLLQEYPPN LDTPLPYLEF RYKRRVYAQN LIDDKQFAKL HTKANLKKFM 

       130        140        150        160        170        180 
DYVQLHSTDK VARLLDKGLD PNFHDPDSGE CPLSLAAQLD NATDLLKVLK NGGAHLDFRT 

       190        200        210        220        230        240 
RDGLTAVHCA TRQRNAAALT TLLDLGASPD YKDSRGLTPL YHSALGGGDA LCCELLLHDH 

       250        260        270        280        290        300 
AQLGITDENG WQEIHQACRF GHVQHLEHLL FYGADMGAQN ASGNTALHIC ALYNQESCAR 

       310        320        330        340        350        360 
VLLFRGANRD VRNYNSQTAF QVAIIAGNFE LAEVIKTHKD SDVVPFRETP SYAKRRRLAG 

       370        380        390        400        410        420 
PSGLASPRPL QRSASDINLK GEAQPAASPG PSLRSLPHQL LLQRLQEEKD RDRDADQESN 

       430        440        450        460        470        480 
ISGPLAGRAG QSKISEPGAP RSCIRIRARF PAPPAPPAPP PRGPKRKLYS AVPGRKFIAV 

       490        500        510        520        530        540 
KAHSPQGEGE IPLHRGEAVK VLSIGEGGFW EGTVKGRTGW FPADCVEEVQ MRQHDTRPET 

       550        560        570        580        590        600 
REDRTKRLFR HYTVGSYDSL TSHSDYVIDD KVAVLQKRDH EGFGFVLRGA KAETPIEEFT 

       610        620        630        640        650        660 
PTPAFPALQY LESVDVEGVA WRAGLRTGDF LIEVNGVNVV KVGHKQVVAL IRQGGNRLVM 

       670        680        690        700        710        720 
KVVSVTRKPE EDGARRRAPP PPKRAPSTTL TLRSKSMTAE LEELASIRRR KGEKLDEMLA 

       730        740        750        760        770        780 
AAAEPTLRPD IADADSRAAT VKQRPTSRRI TPAEISSLFE RQGLPGPEKL PGSLRKGIPR 

       790        800        810        820        830        840 
TKSVGEDEKL ASLLEGRFPR STSMQDPVRE GRGIPPPPQT APPPPPAPYY FDSGPPPAFS 

       850        860        870        880        890        900 
PPPPPGRAYD TVRSSFKPGL EARLGAGAAG LYEPGAALGP LPYPERQKRA RSMIILQDSA 

       910        920        930        940        950        960 
PESGDAPRPP PAATPPERPK RRPRPPGPDS PYANLGAFSA SLFAPSKPQR RKSPLVKQLQ 

       970        980        990       1000       1010       1020 
VEDAQERAAL AVGSPGPGGG SFAREPSPTH RGPRPGGLDY GAGDGPGLAF GGPGPAKDRR 

      1030       1040       1050       1060       1070       1080 
LEERRRSTVF LSVGAIEGSA PGADLPSLQP SRSIDERLLG TGPTAGRDLL LPSPVSALKP 

      1090       1100       1110       1120       1130       1140 
LVSGPSLGPS GSTFIHPLTG KPLDPSSPLA LALAARERAL ASQAPSRSPT PVHSPDADRP 

      1150       1160       1170       1180       1190       1200 
GPLFVDVQAR DPERGSLASP AFSPRSPAWI PVPARREAEK VPREERKSPE DKKSMILSVL 

      1210       1220       1230       1240       1250       1260 
DTSLQRPAGL IVVHATSNGQ EPSRLGGAEE ERPGTPELAP APMQSAAVAE PLPSPRAQPP 

      1270       1280       1290       1300       1310       1320 
GGTPADAGPG QGSSEEEPEL VFAVNLPPAQ LSSSDEETRE ELARIGLVPP PEEFANGVLL 

      1330       1340       1350       1360       1370       1380 
ATPLAGPGPS PTTVPSPASG KPSSEPPPAP ESAADSGVEE ADTRSSSDPH LETTSTISTV 

      1390       1400       1410       1420       1430       1440 
SSMSTLSSES GELTDTHTSF ADGHTFLLEK PPVPPKPKLK SPLGKGPVTF RDPLLKQSSD 

      1450       1460       1470       1480       1490       1500 
SELMAQQHHA ASAGLASAAG PARPRYLFQR RSKLWGDPVE SRGLPGPEDD KPTVISELSS 

      1510       1520       1530       1540       1550       1560 
RLQQLNKDTR SLGEEPVGGL GSLLDPAKKS PIAAARCRSP MVGLRLFSSL GELSSISAQR 

      1570       1580       1590       1600       1610       1620 
SPGGPGGGAS YSVRPSGRYP VARRAPSPVK PASLERVEGL GAGAGGAGRP FGLTPPTILK 

      1630       1640       1650       1660       1670       1680 
SSSLSIPHEP KEVRFVVRSV SARSRSPSPS PLPSPASGPG PGAPGPRRPF QQKPLQLWSK 

      1690       1700       1710       1720       1730       1740 
FDVGDWLESI HLGEHRDRFE DHEIEGAHLP ALTKDDFVEL GVTRVGHRMN IERALRQLDG 


S 

Q9BYB0 in FASTA format

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