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UniProtKB/Swiss-Prot entry Q8XM71

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDLB_CLOPE
Primary accession number Q8XM71
Secondary accession numbers None
Integrated into Swiss-Prot on December 15, 2003
Sequence was last modified on March 1, 2002 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 42)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase B
Synonyms EC 6.3.2.4
D-alanylalanine synthetaseB
D-Ala-D-Ala ligase B
Gene name
Name: ddlB
OrderedLocusNames: CPE0819
From
Clostridium perfringens [TaxID: 1502] [HAMAP proteome]
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=13 / Type A;
DOI=10.1073/pnas.022493799; PubMed=11792842 [NCBI, ExPASy, EBI, Israel, Japan]
Shimizu T., Ohtani K., Hirakawa H., Ohshima K., Yamashita A., Shiba T., Ogasawara N., Hattori M., Kuhara S., Hayashi H.;
"Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.";
Proc. Natl. Acad. Sci. U.S.A. 99:996-1001(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BA000016; BAB80525.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_561735.1; -.
3D structure databases
HSSP P71454; 1EHI. [HSSP ENTRY / PDB]
ModBase Q8XM71.
Enzyme and pathway databases
BioCyc CPER195102:CPE0819-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q8XM71.
Genome annotation databases
GeneID 989078; -.
GenomeReviews BA000016_GR; CPE0819.
KEGG cpe:CPE0819; -.
NMPDR fig|195102.1.peg.882; -.
Phylogenomic databases
HOGENOM Q8XM71; -.
Genome annotation databases
CMR Q8XM71; CPE0819.
Other
ProtoNet Q8XM71.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   302  302     D-alanine--D-alanine ligase B. PRO_0000177808
DOMAIN   99   294  196     ATP-grasp. 
NP_BIND   126   181  56     ATP (By similarity). 
METAL   248   248        Magnesium or manganese 1 (By similarity). 
METAL   261   261        Magnesium or manganese 1 (By similarity). 
METAL   261   261        Magnesium or manganese 2 (By similarity). 
METAL   263   263        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 302 AA [This is the length of the unprocessed precursor] Molecular weight: 33877 Da [This is the MW of the unprocessed precursor] CRC64: 7656F554EA6CE03D [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MKVGIIMGGI SSEREVSLAS GESIFNHIDK EKYEVSKIII NNKIDILEKV KGLDFALLAL 

        70         80         90        100        110        120 
HGKFGEDGTV QAFLDIMDIP YSGCGALSSS LCMDKNLSKK VLKAENIRTA KWITVKSIEE 

       130        140        150        160        170        180 
IDYEKIEEIG YPVFVKPNNG GSSVATFKVY KKEDIKNSVM EGLKYDEEVI IESFIKGREI 

       190        200        210        220        230        240 
TCPIFNGELF PILEIKSKAD FYDYKQKYAA NGAEHLPVQL EKSLYDEVKE MALKTFEVLK 

       250        260        270        280        290        300 
CEVYARVDMI ISEEGVPYIL EVNTLPGMTA TSLFPQSAES RGISYSKFID LIIETSLNKK 


IK
Q8XM71 in FASTA format

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