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UniProtKB/Swiss-Prot entry Q8W1E3


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DOF55_ARATH
Primary accession number Q8W1E3
Secondary accession number Q9FJJ9
Integrated into Swiss-Prot on November 9, 2004
Sequence was last modified on November 9, 2004 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 41)
Name and origin of the protein
Protein name Dof zinc finger protein DOF5.5
Synonym AtDOF5.5
Gene name
Name: DOF5.5
OrderedLocusNames: At5g62430
ORFNames: K19B1.4, MMI9.24
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/5.5.297; PubMed=9872454 [NCBI, ExPASy, EBI, Israel, Japan]
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones.";
DNA Res. 5:297-308(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[3]
GENE FAMILY, AND NOMENCLATURE.
DOI=10.1016/S1360-1385(02)02362-2; PubMed=12475498 [NCBI, ExPASy, EBI, Israel, Japan]
Yanagisawa S.;
"The Dof family of plant transcription factors.";
Trends Plant Sci. 7:555-560(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB015469; BAB11493.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF446362; AAL48235.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY143830; AAN28769.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_201049.3; -.
UniGene At.9300
3D structure databases
ModBase Q8W1E3.
Protein-protein interaction databases
IntAct Q8W1E3; -.
Organism-specific databases
GeneFarm 4477; 446.
TAIR At5g62430; -.
Gene expression databases
ArrayExpress Q8W1E3; -.
GermOnline AT5G62430; Arabidopsis thaliana.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR003851; Znf_Dof.
Graphical view of domain structure.
Pfam PF02701; zf-Dof; 1.
Pfam graphical view of domain structure.
PROSITE PS01361; ZF_DOF_1; 1.
PS50884; ZF_DOF_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q8W1E3.
Genome annotation databases
GeneID 836364; -.
GenomeReviews BA000015_GR; AT5G62430.
KEGG ath:AT5G62430; -.
NMPDR fig|3702.1.peg.28280; -.
Other
ProtoNet Q8W1E3.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Complete proteome; DNA-binding; Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc; Zinc-finger.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom  To Length Description FTId
CHAIN   1   298  298     Dof zinc finger protein DOF5.5. PRO_0000074295
ZN_FING   54   108  55     Dof-type. 
VAR_SEQ   1    61        Missing (in isoform 2). VSP_011870
CONFLICT   84    84        C -> Y (in Ref. 2; AAL48235/AAN28769). 
Sequence information
Length: 298 AA [This is the length of the unprocessed precursor] Molecular weight: 33639 Da [This is the MW of the unprocessed precursor] CRC64: 683CEB24D4F22D75 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN 

        70         80         90        100        110        120 
SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG AGRRKNKNNS PTSHYHHVTI 

       130        140        150        160        170        180 
SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN 

       190        200        210        220        230        240 
PAFYPVYPYW SMPVLSSPVS SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE 

       250        260        270        280        290 
AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM 

Q8W1E3 in FASTA format

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