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UniProtKB/Swiss-Prot entry Q8LFV3


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DOF33_ARATH
Primary accession number Q8LFV3
Secondary accession number O81600
Integrated into Swiss-Prot on October 25, 2004
Sequence was last modified on October 25, 2004 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 38)
Name and origin of the protein
Protein name Dof zinc finger protein DOF3.3
Synonyms AtDOF3.3
H-protein promoter-binding factor 2a
Gene name
Name: DOF3.3
Synonyms: HPPBF-2A
OrderedLocusNames: At3g47500
ORFNames: F1P2.50
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
Abbaraju H.K.R., Oliver D.J.;
"Molecular cloning of the H-protein promoter binding factor from Arabidopsis.";
Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY, AND NOMENCLATURE.
DOI=10.1016/S1360-1385(02)02362-2; PubMed=12475498 [NCBI, ExPASy, EBI, Israel, Japan]
Yanagisawa S.;
"The Dof family of plant transcription factors.";
Trends Plant Sci. 7:555-560(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF079503; AAC28390.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL132955; CAB61976.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY065152; AAL38328.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY128757; AAM91157.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY084628; AAM61191.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T45710; T45710.
RefSeq NP_190334.1; -.
UniGene At.519
3D structure databases
ModBase Q8LFV3.
Protein-protein interaction databases
IntAct Q8LFV3; -.
Organism-specific databases
GeneFarm 4398; 446.
TAIR At3g47500; -.
Gene expression databases
ArrayExpress Q8LFV3; -.
GermOnline AT3G47500; Arabidopsis thaliana.
Ontologies
GO
GO:0005634; Cellular component: nucleus (inferred from electronic annotation from UniProtKB-KW).
GO:0003677; Molecular function: DNA binding (inferred from electronic annotation from InterPro).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0008270; Molecular function: zinc ion binding (inferred from electronic annotation from InterPro).
GO:0006355; Biological process: regulation of transcription, DNA-dependent (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR003851; Znf_Dof.
Graphical view of domain structure.
Pfam PF02701; zf-Dof; 1.
Pfam graphical view of domain structure.
PROSITE PS01361; ZF_DOF_1; 1.
PS50884; ZF_DOF_2; 1.
PROSITE graphical view of domain structure (profiles).
ProtoNet Q8LFV3.
Genome annotation databases
GeneID 823904; -.
GenomeReviews BA000014_GR; AT3G47500.
KEGG ath:AT3G47500; -.
NMPDR fig|3702.1.peg.15973; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; DNA-binding; Metal-binding; Nucleus; Transcription; Transcription regulation; Zinc; Zinc-finger.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   448  448     Dof zinc finger protein DOF3.3. PRO_0000074279
ZN_FING   110   164  55     Dof-type. 
COMPBIAS   291   329  39     Pro-rich. 
CONFLICT   88    88        D -> E (in Ref. 4; AAM61191). 
CONFLICT   201   201        Q -> H (in Ref. 4; AAM61191). 
CONFLICT   206   206        Missing (in Ref. 4). 
CONFLICT   210   210        T -> A (in Ref. 4; AAM61191). 
CONFLICT   217   217        E -> G (in Ref. 4; AAM61191). 
CONFLICT   228   228        R -> G (in Ref. 4; AAM61191). 
CONFLICT   270   271        SV -> RI (in Ref. 4; AAM61191). 
CONFLICT   274   274        A -> P (in Ref. 4; AAM61191). 
CONFLICT   277   278        Missing (in Ref. 4; AAM61191). 
CONFLICT   327   328        LP -> ISPS (in Ref. 4; AAM61191). 
CONFLICT   340   340        C -> D (in Ref. 4; AAM61191). 
CONFLICT   351   352        HP -> RS (in Ref. 4; AAM61191). 
CONFLICT   356   356        G -> E (in Ref. 4; AAM61191). 
CONFLICT   360   362        KDN -> RDS (in Ref. 4; AAM61191). 
CONFLICT   369   370        KA -> RT (in Ref. 4; AAM61191). 
CONFLICT   373   373        V -> I (in Ref. 4; AAM61191). 
Sequence information
Length: 448 AA [This is the length of the unprocessed precursor] Molecular weight: 49730 Da [This is the MW of the unprocessed precursor] CRC64: 6E61FA7A7A8DF1F6 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC 

        70         80         90        100        110        120 
NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG KTLKKPTKIL PCPRCKSMET 

       130        140        150        160        170        180 
KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA 

       190        200        210        220        230        240 
ARLDPGLQAN TRVLSFGLEA QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR 

       250        260        270        280        290        300 
VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN 

       310        320        330        340        350        360 
PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK 

       370        380        390        400        410        420 
DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN EAMCKAGGMF KGFDHKTKMY 

       430        440 
NNDKAENSPV LSANPAALSR SHNFHEQI 

Q8LFV3 in FASTA format

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