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UniProtKB/Swiss-Prot entry Q8JUX5


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name POLS_CHIKS
Primary accession number Q8JUX5
Secondary accession numbers Q80S29 Q8QR21
Integrated into Swiss-Prot on March 7, 2006
Sequence was last modified on June 1, 2003 (Sequence version 2)
Annotations were last modified on    April 29, 2008 (Entry version 44)
Name and origin of the protein
Protein name Structural polyprotein
Synonym p130
Contains Capsid protein
     (EC 3.4.21.-)
     (Coat protein)
     (C)
p62
     (E3/E2)
E3 protein
     (Spike glycoprotein E3)
E2 envelope glycoprotein
     (Spike glycoprotein E2)
6K protein
E1 envelope glycoprotein
     (Spike glycoprotein E1)
Gene name None
From
Chikungunya virus (strain S27-African prototype) (CHIKV) [TaxID: 371094] 
Taxonomy Viruses; ssRNA positive-strand viruses, no DNA stage; Togaviridae; Alphavirus; SFV complex.
Virus hosts Aedes aegypti (Yellowfever mosquito) [TaxID: 7159]
Aedes albopictus (Forest day mosquito) [TaxID: 7160]
Aedes furcifer [TaxID: 299627]
Aedes polynesiensis [TaxID: 188700]
Cercopithecus [TaxID: 9533]
Homo sapiens (Human) [TaxID: 9606]
Macaca (macaques) [TaxID: 9539]
Pan troglodytes (Chimpanzee) [TaxID: 9598]
Papio (baboons) [TaxID: 9554]
Presbytis [TaxID: 9573]
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
PubMed=12466484 [NCBI, ExPASy, EBI, Israel, Japan]
Khan A.H., Morita K., Parquet Md Mdel C., Hasebe F., Mathenge E.G., Igarashi A.;
"Complete nucleotide sequence of chikungunya virus and evidence for an internal polyadenylation site.";
J. Gen. Virol. 83:3075-3084(2002).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
Kinney R.M., Pfeffer M.;
"Nucleotide sequence analyses of the 26S mRNAs of viruses of the genus Alphavirus.";
Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
STRAIN=Isolate Ross;
Logue C.H., Atkins G.J.;
Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases.
Comments
  • FUNCTION: Capsid protein possesses a protease activity that results in its autocatalytic cleavage from the nascent structural protein. Following its self-cleavage, the capsid protein transiently associates with ribosomes, and within several minutes the protein binds to viral RNA and rapidly assembles into icosaedric core particles. The resulting nucleocapsid eventually associates with the cytoplasmic domain of E2 at the cell membrane, leading to budding and formation of mature virions. New virions attach to target cells, and after endocytosis their membrane fuses with the target cell membrane. This leads to the release of the nucleocapsid into the cytoplasm, followed by an uncoating event necessary for the genomic RNA to become accessible. The uncoating might be triggered by the interaction of capsid proteins with ribosomes. Binding of ribosomes would release the genomic RNA since the same region is genomic RNA-binding and ribosome-binding (By similarity).
  • FUNCTION: E3 protein's function is unknown (By similarity).
  • FUNCTION: E2 is responsible for viral attachment to target host cell, by binding to the cell receptor. Synthetized as a p62 precursor which is processed by furin at the cell membrane just before virion budding, giving rise to E2-E1 heterodimer. The p62-E1 heterodimer is stable, whereas E2-E1 is unstable and dissociate at low pH. p62 is processed at the last step, presumably to avoid E1 fusion activation before its final export to cell surface. E2 C-terminus contains a transitory transmembrane that would be disrupted by palmitoylation, resulting in reorientation of the C-terminal tail from lumenal to cytoplasmic side. This step is critical since E2 C-terminus is involved in budding by interacting with capsid proteins. This release of E2 C-terminus in cytoplasm occurs lately in protein export, and precludes premature assembly of particles at the endoplasmic reticulum membrane (By similarity).
  • FUNCTION: 6K is a constitutive membrane protein involved in virus glycoprotein processing, membrane permeabilization, and the budding of viral particles. Because of its lipophilic properties, the 6K protein is postulated to influence the selection of lipids that interact with the transmembrane domains of the glycoproteins, which, in turn, affects the deformability of the bilayer required for the extreme curvature that occurs as budding proceeds (By similarity).
  • FUNCTION: E1 is a class II viral fusion protein. Fusion activity is inactive as long as E1 is bound to E2 in mature virion. After virus attachment to target cell and endocytosis, acidification of the endosome would induce dissociation of E1/E2 heterodimer and concomitant trimerization of the E1 subunits. This E1 trimer is fusion active, and promotes release of viral nucleocapsid in cytoplasm after cell and viral membrane fusion. Efficient fusion requires the presence of cholesterol and sphingolipid in the target membrane (By similarity).
  • SUBUNIT: p62 and E1 form a heterodimer shortly after synthesis. Processing of p62 into E2 and E3 results in a heterodimer of E2 and E1. Spike at virion surface are constituted of three E2-E1 heterodimers. After target cell attachment and endocytosis, E1 change conformation to form homotrimers (By similarity).
  • SUBCELLULAR LOCATION: Capsid protein: Virion (By similarity). Cytoplasm (By similarity).
  • SUBCELLULAR LOCATION: p62: Virion membrane; Single-pass type I membrane protein (By similarity). Cell membrane; Single-pass type I membrane protein (By similarity).
  • SUBCELLULAR LOCATION: E2 envelope glycoprotein: Virion membrane; Single-pass type I membrane protein (By similarity). Cell membrane; Single-pass type I membrane protein (By similarity).
  • SUBCELLULAR LOCATION: E1 envelope glycoprotein: Virion membrane; Single-pass type I membrane protein (By similarity). Cell membrane; Single-pass type I membrane protein (By similarity).
  • SUBCELLULAR LOCATION: 6K protein: Cell membrane; Multi-pass membrane protein (By similarity). Virion membrane; Multi-pass membrane protein (By similarity).
  • PTM: Specific enzymatic cleavages in vivo yield mature proteins. Capsid protein is auto-cleaved during polyprotein translation, unmasking p62 signal peptide. The remaining polyprotein is then targeted to the endoplasmic reticulum, where host signal peptidase cleaves it into p62, 6K and E1 proteins. p62 is further processed to mature E3 and E2 by host furin in trans-Golgi vesicle (By similarity).
  • PTM: E2 is palmitoylated via thioester bonds. These palmitoylations may induce disruption of the C-terminus transmembrane. This would result in the reorientation of E2 c-terminus from lumenal to cytoplasmic side. 6K protein is also palmitoylated. E1 is stearoylated (By similarity).
  • MISCELLANEOUS: Structural polyprotein is translated from a subgenomic RNA synthesized during togavirus replication.
  • SIMILARITY: Contains 1 peptidase S3 domain [view classification].
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF369024; AAN05102.2; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF339485; AAO33341.1; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF490259; AAM10747.1; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
3D structure databases
HSSP P03315; 1VCP. [HSSP ENTRY / PDB]
SMR Q8JUX5; 113-261.
ModBase Q8JUX5.
Protein family/group databases
MEROPS S03.001; -.
Family and domain databases
InterPro IPR002548; Alpha_E1_glycop.
IPR000936; Alpha_E2_glycop.
IPR002533; Alpha_E3_glycop.
IPR000930; Peptidase_S3.
Graphical view of domain structure.
Pfam PF01589; Alpha_E1_glycop; 1.
PF00943; Alpha_E2_glycop; 1.
PF01563; Alpha_E3_glycop; 1.
PF00944; Peptidase_S3; 1.
Pfam graphical view of domain structure.
PRINTS PR00798; TOGAVIRIN.
BLOCKS Q8JUX5.
Other
ProtoNet Q8JUX5.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Capsid protein; Cleavage on pair of basic residues; Cytoplasm; Glycoprotein; Hydrolase; Lipoprotein; Membrane; Palmitate; Protease; Serine protease; Signal; Transmembrane; Virion.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom    To Length Description FTId
CHAIN   1    261  261     Capsid protein (By similarity). PRO_0000226219
CHAIN   262    748  487     p62 (By similarity). PRO_0000226220
CHAIN   262    325  64     E3 protein (By similarity). PRO_0000226221
SIGNAL   262    275  14     Not cleaved (Potential). 
CHAIN   326    748  423     E2 envelope glycoprotein (By similarity). PRO_0000226222
CHAIN   749    809  61     6K protein (By similarity). PRO_0000226223
CHAIN   810   1248  439     E1 envelope glycoprotein (By similarity). PRO_0000226224
TOPO_DOM   262    692  431     Extracellular (Potential). 
TRANSMEM   693    713  21     Potential. 
TOPO_DOM   714    748  35     Cytoplasmic (Potential). 
TOPO_DOM   749    763  15     Extracellular (Potential). 
TRANSMEM   764    784  21     Potential. 
TOPO_DOM   785    795  11     Cytoplasmic (Potential). 
TRANSMEM   796    816  21     Potential. 
TOPO_DOM   817   1224  408     Extracellular (Potential). 
TRANSMEM   1225   1245  21     Potential. 
TOPO_DOM   1246   1248  3     Cytoplasmic (Potential). 
DOMAIN   106    261  156     Peptidase S3. 
REGION   1    107  107     Intrinsically disordered, in contact with genomic RNA in nucleocapsid (Potential). 
REGION   91    100  10     Ribosome-binding (By similarity). 
REGION   721    741  21     Transient transmembrane before p62-6K protein processing (Potential). 
REGION   893    910  18     E1 fusion peptide loop (By similarity). 
COMPBIAS   60     98  39     Lys-rich. 
ACT_SITE   139    139        Charge relay system (By similarity). 
ACT_SITE   145    145        Charge relay system (By similarity). 
ACT_SITE   213    213        Charge relay system (By similarity). 
SITE   261    262  2     Cleavage; by capsid protein (By similarity). 
SITE   325    326  2     Cleavage; by host furin (By similarity). 
SITE   748    749  2     Cleavage; by host signal peptidase (By similarity). 
SITE   809    810  2     Cleavage; by host signal peptidase (By similarity). 
LIPID   721    721        S-palmitoyl cysteine; by host (By similarity). 
LIPID   741    741        S-palmitoyl cysteine; by host (By similarity). 
LIPID   742    742        S-palmitoyl cysteine; by host (By similarity). 
LIPID   1242   1242        S-stearoyl cysteine; by host (By similarity). 
CARBOHYD   273    273        N-linked (GlcNAc...) (Potential). 
CARBOHYD   588    588        N-linked (GlcNAc...) (Potential). 
CARBOHYD   670    670        N-linked (GlcNAc...) (Potential). 
CARBOHYD   950    950        N-linked (GlcNAc...) (Potential). 
DISULFID   113    128        By similarity. 
DISULFID   858    923        By similarity. 
DISULFID   871    903        By similarity. 
DISULFID   872    905        By similarity. 
DISULFID   877    887        By similarity. 
DISULFID   1068   1080        By similarity. 
DISULFID   1110   1185        By similarity. 
DISULFID   1115   1189        By similarity. 
DISULFID   1137   1179        By similarity. 
CONFLICT   63     63        K -> R (in Ref. 2 and 3). 
CONFLICT   91     97        Missing (in Ref. 3). 
CONFLICT   519    520        SQ -> GR (in Ref. 2 and 3). 
CONFLICT   576    576        R -> P (in Ref. 3; AAM10747). 
CONFLICT   592    592        M -> R (in Ref. 3; AAM10747). 
Sequence information
Length: 1248 AA [This is the length of the unprocessed precursor] Molecular weight: 138088 Da [This is the MW of the unprocessed precursor] CRC64: A56982D67B774153 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MEFIPTQTFY NRRYQPRPWT PRPTIQVIRP RPRPQRQAGQ LAQLISAVNK LTMRAVPQQK 

        70         80         90        100        110        120 
PRKNRKNKKQ KQKQQAPQNN TNQKKQPPKK KPAQKKKKPG RRERMCMKIE NDCIFEVKHE 

       130        140        150        160        170        180 
GKVTGYACLV GDKVMKPAHV KGTIDNADLA KLAFKRSSKY DLECAQIPVH MKSDASKFTH 

       190        200        210        220        230        240 
EKPEGYYNWH HGAVQYSGGR FTIPTGAGKP GDSGRPIFDN KGRVVAIVLG GANEGARTAL 

       250        260        270        280        290        300 
SVVTWNKDIV TKITPEGAEE WSLAIPVMCL LANTTFPCSQ PPCIPCCYEK EPEETLRMLE 

       310        320        330        340        350        360 
DNVMRPGYYQ LLQASLTCSP HRQRRSTKDN FNVYKATRPY LAHCPDCGEG HSCHSPVALE 

       370        380        390        400        410        420 
RIRNEATDGT LKIQVSLQIG IGTDDSHDWT KLRYMDNHIP ADAGRAGLFV RTSAPCTITG 

       430        440        450        460        470        480 
TMGHFILARC PKGETLTVGF TDSRKISHSC THPFHHDPPV IGREKFHSRP QHGKELPCST 

       490        500        510        520        530        540 
YVQSNAATAE EIEVHMPPDT PDRTLLSQQS GNVKITVNSQ TVRYKCNCGG SNEGLITTDK 

       550        560        570        580        590        600 
VINNCKVDQC HAAVTNHKKW QYNSPLVPRN AELGDRKGKI HIPFPLANVT CMVPKARNPT 

       610        620        630        640        650        660 
VTYGKNQVIM LLYPDHPTLL SYRSMGEEPN YQEEWVTHKK EVVLTVPTEG LEVTWGNNEP 

       670        680        690        700        710        720 
YKYWPQLSAN GTAHGHPHEI ILYYYELYPT MTVVVVSVAS FILLSMVGMA VGMCMCARRR 

       730        740        750        760        770        780 
CITPYELTPG ATVPFLLSLI CCIRTAKAAT YQEAAVYLWN EQQPLFWLQA LIPLAALIVL 

       790        800        810        820        830        840 
CNCLRLLPCC CKTLAFLAVM SIGAHTVSAY EHVTVIPNTV GVPYKTLVNR PGYSPMVLEM 

       850        860        870        880        890        900 
ELLSVTLEPT LSLDYITCEY KTVIPSPYVK CCGTAECKDK NLPDYSCKVF TGVYPFMWGG 

       910        920        930        940        950        960 
AYCFCDAENT QLSEAHVEKS ESCKTEFASA YRAHTASASA KLRVLYQGNN ITVTAYANGD 

       970        980        990       1000       1010       1020 
HAVTVKDAKF IVGPMSSAWT PFDNKIVVYK GDVYNMDYPP FGAGRPGQFG DIQSRTPESK 

      1030       1040       1050       1060       1070       1080 
DVYANTQLVL QRPAAGTVHV PYSQAPSGFK YWLKERGASL QHTAPFGCQI ATNPVRAMNC 

      1090       1100       1110       1120       1130       1140 
AVGNMPISID IPDAAFTRVV DAPSLTDMSC EVPACTHSSD FGGVAIIKYA VSKKGKCAVH 

      1150       1160       1170       1180       1190       1200 
SMTNAVTIRE AEIEVEGNSQ LQISFSTALA SAEFRVQVCS TQVHCAAECH PPKDHIVNYP 

      1210       1220       1230       1240 
ASHTTLGVQD ISATAMSWVQ KITGGVGLVV AVAALILIVV LCVSFSRH 

Q8JUX5 in FASTA format

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