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UniProtKB/Swiss-Prot entry Q8JSD9


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NRAM_I47A0
Primary accession number Q8JSD9
Secondary accession numbers Q9WMK7 Q9WMK8
Integrated into Swiss-Prot on March 6, 2007
Sequence was last modified on October 1, 2002 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 38)
Name and origin of the protein
Protein name Neuraminidase
Synonym EC 3.2.1.18
Gene name
Name: NA
From
Influenza A virus (strain A/Fort Monmouth/1/1947 H1N1) [TaxID: 229411] 
Taxonomy Viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A.
Virus hosts Aves [TaxID: 8782]
Homo sapiens (Human) [TaxID: 9606]
Sus scrofa (Pig) [TaxID: 9823]
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
STRAIN=A/Fort Monmouth/1/1947-MA;
DOI=10.1016/S0168-1702(99)00027-1; PubMed=10426210 [NCBI, ExPASy, EBI, Israel, Japan]
Brown E.G., Bailly J.E.;
"Genetic analysis of mouse-adapted influenza A virus identifies roles for the NA, PB1, and PB2 genes in virulence.";
Virus Res. 61:63-76(1999).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=A/Fort Monmouth/1/1947-MA;
DOI=10.1073/pnas.100140097; PubMed=10823895 [NCBI, ExPASy, EBI, Israel, Japan]
Reid A.H., Fanning T.G., Janczewski T.A., Taubenberger J.K.;
"Characterization of the 1918 'Spanish' influenza virus neuraminidase gene.";
Proc. Natl. Acad. Sci. U.S.A. 97:6785-6790(2000).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC RNA].
DOI=10.1073/pnas.162366899; PubMed=12136133 [NCBI, ExPASy, EBI, Israel, Japan]
Kilbourne E.D., Smith C., Brett I., Pokorny B.A., Johansson B., Cox N.;
"The total influenza vaccine failure of 1947 revisited: major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemic.";
Proc. Natl. Acad. Sci. U.S.A. 99:10748-10752(2002).
[4]
REVIEW.
DOI=10.1016/j.virusres.2004.08.012; PubMed=15567494 [NCBI, ExPASy, EBI, Israel, Japan]
Nayak D.P., Hui E.K., Barman S.;
"Assembly and budding of influenza virus.";
Virus Res. 106:147-165(2004).
[5]
REVIEW.
DOI=10.1056/NEJMra050740; PubMed=16192481 [NCBI, ExPASy, EBI, Israel, Japan]
Moscona A.;
"Neuraminidase inhibitors for influenza.";
N. Engl. J. Med. 353:1363-1373(2005).
[6]
REVIEW.
DOI=10.1248/bpb.28.399; PubMed=15744059 [NCBI, ExPASy, EBI, Israel, Japan]
Suzuki Y.;
"Sialobiology of influenza: molecular mechanism of host range variation of influenza viruses.";
Biol. Pharm. Bull. 28:399-408(2005).
Comments
  • FUNCTION: Catalyzes the removal of terminal sialic acid residues from viral and cellular glycoconjugates. Cleaves off the terminal sialic acids on the glycosylated HA during virus budding to facilitate virus release. Additionally helps virus spread through the circulation by further removing sialic acids from the cell surface. These cleavages prevent self-aggregation and ensure the efficient spread of the progeny virus from cell to cell. Otherwise, infection would be limited to one round of replication. Described as a receptor-destroying enzyme because it cleaves a terminal sialic acid from the cellular receptors. May facilitate viral invasion of the upper airways by cleaving the sialic acid moities on the mucin of the airway epithelial cells. Likely to plays a role in the budding process through its association with lipid rafts during intracellular transport. May additionally display a raft-association independent effect on budding. Plays a role in the determination of host range restriction on replication and virulence. Sialidase activity in late endosome/lysosome traffic seems to enhance virus replication.
  • CATALYTIC ACTIVITY: Hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)- glycosidic linkages of terminal sialic acid residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
  • COFACTOR: Binds 1 calcium ion (By similarity).
  • ENZYME REGULATION: Inhibited by the neuraminidase inhibitors zanamivir (Relenza) and oseltamivir (Tamiflu). These drugs interfere with the release of progeny virus from infected cells and are effective against all influenza strains. Resistance to neuraminidase inhibitors is quite rare.
  • SUBUNIT: Homotetramer (By similarity).
  • SUBCELLULAR LOCATION: Virion membrane (By similarity). Apical cell membrane; Single-pass type II membrane protein (By similarity). Note=Preferentially accumulates at the apical plasma membrane in infected polarized epithelial cells, which is the virus assembly site. Uses lipid rafts for cell surface transport and apical sorting. In the virion, forms a mushroom-shaped spike on the surface of the membrane (By similarity).
  • DOMAIN: Intact N-terminus is essential for virion morphogenesis. Possess two apical sorting signals, one in the ectodomain, which is likely to be a glycan, and the other in the transmembrane domain. The transmembrane domain also plays a role in lipid raft association (By similarity).
  • PTM: N-glycosylated (By similarity).
  • MISCELLANEOUS: The influenza A genome consist of 8 RNA segments. Genetic variation of hemagglutinin and/or neuraminidase genes results in the emergence of new influenza strains. The mechanism of variation can be the result of point mutations or the result of genetic reassortment between segments of two different strains.
  • SIMILARITY: Belongs to the glycosyl hydrolase 34 family [view classification].
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF494253; AAM76693.1; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Y14193; CAB40419.1; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Y14194; CAB40420.1; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF250357; AAF77037.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
3D structure databases
HSSP P03472; 1F8E. [HSSP ENTRY / PDB]
SMR Q8JSD9; 83-467.
ModBase Q8JSD9.
Ontologies
GO
GO:0016324; Cellular component: apical plasma membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0016021; Cellular component: integral to membrane (inferred from electronic annotation from UniProtKB-KW).
GO:0055036; Cellular component: virion membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004308; Molecular function: exo-alpha-sialidase activity (inferred from electronic annotation from InterPro).
GO:0005975; Biological process: carbohydrate metabolic process (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR001860; Glyco_hydro_34.
Graphical view of domain structure.
Pfam PF00064; Neur; 1.
Pfam graphical view of domain structure.
ProDom PD000431; Glyco_hydro_34; 1.
[Domain structure / List of seq. sharing at least 1 domain]
ProtoNet Q8JSD9.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Calcium; Cell membrane; Glycoprotein; Glycosidase; Hydrolase; Membrane; Metal-binding; Signal-anchor; Transmembrane; Virion.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   469  469     Neuraminidase. PRO_0000280130
TOPO_DOM   1     6  6     Cytoplasmic (Potential). 
TRANSMEM   7    27  21     Signal-anchor for type II membrane protein (Potential). 
TOPO_DOM   28   469  442     Extracellular (Potential). 
REGION   11    33  23     Involved in apical transport and lipid raft association (By similarity). 
REGION   36    90  55     Hypervariable stalk region (By similarity). 
REGION   91   469  379     Head of neuraminidase (By similarity). 
ACT_SITE   151   151        Potential. 
ACT_SITE   277   277        Potential. 
ACT_SITE   402   402        Potential. 
METAL   294   294        Calcium; via carbonyl oxygen (By similarity). 
METAL   298   298        Calcium; via carbonyl oxygen (By similarity). 
METAL   324   324        Calcium (By similarity). 
BINDING   118   118        Substrate (Potential). 
BINDING   293   293        Substrate (Potential). 
BINDING   368   368        Substrate (Potential). 
CARBOHYD   44    44        N-linked (GlcNAc...) (Potential). 
CARBOHYD   58    58        N-linked (GlcNAc...) (Potential). 
CARBOHYD   63    63        N-linked (GlcNAc...) (Potential). 
CARBOHYD   68    68        N-linked (GlcNAc...) (Potential). 
CARBOHYD   88    88        N-linked (GlcNAc...) (Potential). 
CARBOHYD   146   146        N-linked (GlcNAc...) (Potential). 
CARBOHYD   235   235        N-linked (GlcNAc...) (Potential). 
CARBOHYD   365   365        N-linked (GlcNAc...) (Potential). 
DISULFID   92   417        By similarity. 
DISULFID   124   129        By similarity. 
DISULFID   184   231        By similarity. 
DISULFID   233   238        By similarity. 
DISULFID   279   292        By similarity. 
DISULFID   281   290        By similarity. 
DISULFID   421   446        By similarity. 
VARIANT   68    72  5     Missing (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   130   130  1     K -> R (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   339   339  1     N -> Y (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   344   344  1     D -> N (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   352   352  1     R -> K (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   357   357  1     G -> V (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   369   369  1     K -> Q (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   382   383  2     DP -> ET (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   388   389  2     LV -> FT (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   393   393  1     I -> V (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   396   396  1     M -> V (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   460   460  1     D -> G (in strain: A/Fort Monmouth/1/1947-MA). 
VARIANT   465   466  2     LN -> FT (in strain: A/Fort Monmouth/1/1947-MA). 
CONFLICT   365   365        N -> I (in Ref. 1; CAB40420). 
Sequence information
Length: 469 AA [This is the length of the unprocessed precursor] Molecular weight: 51499 Da [This is the MW of the unprocessed precursor] CRC64: 74E0E3A8BB7F08BC [This is a checksum on the sequence]
        10         20         30         40         50         60 
MNPNQKIITI GSICMVVGII SLILQIGNIV SIWISHSIQT GNQNHTGTCD QSIITYKNST 

        70         80         90        100        110        120 
WVNQTYVNIS NTNVVAGKDT TSVILAGNSS LCPIRGWAIY SKDNGVRIGS KGDVFVIREP 

       130        140        150        160        170        180 
FISCSHLECK TFFLTQGALL NDKHSNGTVK DRSPYRALMS CPVGEAPSPY NSRFESVAWS 

       190        200        210        220        230        240 
ASACHDGMGW LTIGISGPDD GAVAVLKYNG IITETIKSWR KEILRTQESE CVCVNGSCFT 

       250        260        270        280        290        300 
IMTDGPSGGP ASYKIFKIEK GKVTKSIELD APNSHYEECS CYPDTSKVMC VCRDNWHGSN 

       310        320        330        340        350        360 
RPWVSFDQNL DYQMGYICSG VFGDNPRPKD GKGSCGPVNV DGADGVKGFS YRYGNGGWIG 

       370        380        390        400        410        420 
RTKSNSSRKG FEMIWDPNGW TDPDSNFLVK QDIVAMTDWS GYSGSFVQHP ELTGLDCMRP 

       430        440        450        460 
CFWVELIRGR PKENTIWTSG SSISFCGVNS DTVDWSWPDD AELPLNIDK 

Q8JSD9 in FASTA format

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