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UniProtKB/Swiss-Prot entry Q89GA7

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDLA_BRAJA
Primary accession number Q89GA7
Secondary accession numbers None
Integrated into Swiss-Prot on December 15, 2003
Sequence was last modified on June 1, 2003 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 39)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase A
Synonyms EC 6.3.2.4
D-alanylalanine synthase A
D-Ala-D-Ala ligase A
Gene name
Name: ddlA
OrderedLocusNames: blr6438
From
Bradyrhizobium japonicum [TaxID: 375] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=USDA 110;
DOI=10.1093/dnares/9.6.189; PubMed=12597275 [NCBI, ExPASy, EBI, Israel, Japan]
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.";
DNA Res. 9:189-197(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BA000040; BAC51703.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_773078.1; -.
3D structure databases
HSSP P07862; 1IOW. [HSSP ENTRY / PDB]
ModBase Q89GA7.
Enzyme and pathway databases
BioCyc BJAP224911:BLR6438-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q89GA7.
Genome annotation databases
GeneID 1047518; -.
GenomeReviews BA000040_GR; blr6438.
KEGG bja:blr6438; -.
NMPDR fig|224911.1.peg.6438; -.
Phylogenomic databases
HOGENOM Q89GA7; -.
Genome annotation databases
CMR Q89GA7; blr6438.
Other
ProtoNet Q89GA7.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   373  373     D-alanine--D-alanine ligase A. PRO_0000177792
DOMAIN   146   355  210     ATP-grasp. 
NP_BIND   179   234  56     ATP (By similarity). 
METAL   308   308        Magnesium or manganese 1 (By similarity). 
METAL   322   322        Magnesium or manganese 1 (By similarity). 
METAL   322   322        Magnesium or manganese 2 (By similarity). 
METAL   324   324        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 373 AA [This is the length of the unprocessed precursor] Molecular weight: 40799 Da [This is the MW of the unprocessed precursor] CRC64: 896E99143E48A84C [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MADKIRVVVL YGGRSGEHEV SLKSAASVFR HLDRTRFEVI PVSIDKTGRW QWNDLRSLDQ 

        70         80         90        100        110        120 
AHAAALPILP DAPEMRLARG PDGRGVLVPI TQGAAAPIAI DVVFPVIHGP LCEDGTVQGL 

       130        140        150        160        170        180 
LELADVAYVG SGVLASAVSM DKDVAKRLAE FAGIPVAPYR VLTRKAFVQD RVSSLAKAVE 

       190        200        210        220        230        240 
GLSLPVFVKP CNMGSSVGIH KVKTQDALEA ALDDAFRYDV KVLVQQGIDA REIEVAVLED 

       250        260        270        280        290        300 
ETLFASLASE LNPNAHHEFY SYEAKYLDPD GARVDLPARL DAAQMERVRS LATRVFAALE 

       310        320        330        340        350        360 
CSGFARVDFF LDRKTGEFCF NEINTLPGFT SISMYPKMME ASGVPYGELL SRLVDLALDR 

       370 
HRQRQSLERG YAS
Q89GA7 in FASTA format

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