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UniProtKB/Swiss-Prot entry Q88W23

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TRMFO_LACPL
Primary accession number Q88W23
Secondary accession numbers None
Integrated into Swiss-Prot on July 25, 2003
Sequence was last modified on June 1, 2003 (Sequence version 1)
Annotations were last modified on    November 4, 2008 (Entry version 31)
Name and origin of the protein
Protein name Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO
Synonyms EC 2.1.1.74
Folate-dependent tRNA (uracil-5-)-methyltransferase
Folate-dependent tRNA(M-5-U54)-methyltransferase
Gene name
Name: trmFO
Synonyms: gid, gidC
OrderedLocusNames: lp_1848
From
Lactobacillus plantarum [TaxID: 1590] [HAMAP proteome]
Taxonomy Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC BAA-793 / NCIMB 8826 / WCFS1;
DOI=10.1073/pnas.0337704100; PubMed=12566566 [NCBI, ExPASy, EBI, Israel, Japan]
Kleerebezem M., Boekhorst J., van Kranenburg R., Molenaar D., Kuipers O.P., Leer R., Tarchini R., Peters S.A., Sandbrink H.M., Fiers M.W.E.J., Stiekema W., Klein Lankhorst R.M., Bron P.A., Hoffer S.M., Nierop Groot M.N., Kerkhoven R., De Vries M., Ursing B., De Vos W.M., Siezen R.J.;
"Complete genome sequence of Lactobacillus plantarum WCFS1.";
Proc. Natl. Acad. Sci. U.S.A. 100:1990-1995(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL935257; CAD64248.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_785399.1; -.
3D structure databases
ModBase Q88W23.
Enzyme and pathway databases
BioCyc LPLA220668:LP_1848-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0050660; Molecular function: FAD binding (inferred from electronic annotation from HAMAP).
GO:0047151; Molecular function: methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity (inferred from electronic annotation from EC).
GO:0009021; Molecular function: tRNA (uracil-5-)-methyltransferase activity (inferred from electronic annotation from HAMAP).
GO:0008033; Biological process: tRNA processing (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_01037; -; 1.
PBIL [Tree]
InterPro IPR004417; Gid.
IPR002218; GIDA.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR11806; GIDA; 1.
Pfam PF01134; GIDA; 1.
Pfam graphical view of domain structure.
ProDom PD003738; GIDA; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00137; gid_trmFO; 1.
PROSITE PS01280; GIDA_1; FALSE_NEG.
PS01281; GIDA_2; 1.
BLOCKS Q88W23.
ProtoNet Q88W23.
Genome annotation databases
GeneID 1064052; -.
GenomeReviews AL935263_GR; lp_1848.
KEGG lpl:lp_1848; -.
NMPDR fig|220668.1.peg.1533; -.
Phylogenomic databases
HOGENOM Q88W23; -.
Genome annotation databases
CMR Q88W23; lp_1848.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; FAD; Flavoprotein; Methyltransferase; Transferase; tRNA processing.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
CHAIN   1   441  441     Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase trmFO. PRO_0000117248
NP_BIND   11    16  6     FAD (By similarity). 
Sequence information
Length: 441 AA [This is the length of the unprocessed precursor] Molecular weight: 48261 Da [This is the MW of the unprocessed precursor] CRC64: 0D1B4E9B6DEDF78D [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MASIPTVNVI GAGLAGSEAA WHIANMGVNV RLYEMRPNKM TPAHHTAQFA ELVCTNSLRA 

        70         80         90        100        110        120 
NQLANAAGLL KAEMRQMDSI VMQAAEHHAV PAGGALAVDR DTFSAEITAA ITALPNVEII 

       130        140        150        160        170        180 
NEEITSLPDG ITVVATGPLT AASLAKSIQA FNDEDDLHFF DAAAPILTKD SIDMDKVYLK 

       190        200        210        220        230        240 
SRYDRGEAAY LNCPMTEAEF DVFYDALIHA EMAEAHDFEN SDVFEGCMPI EVMAQRGRQT 

       250        260        270        280        290        300 
MLFGPLKPVG LEDPKTGKQP FAVVQLRQDD AAGDLYNIVG FQTHLKWGEQ KRVFSLIPGL 

       310        320        330        340        350        360 
ENVEFVRYGV MHRNTFMKSP KLLTPTYQTQ QRPDLFFAGQ MTGVEGYIES AASGIVAGTN 

       370        380        390        400        410        420 
AARLALGLEP VVFPTDTMMG AMAHYITHTS ASNFQPMNAN FGIMPKLKQR IRDKRERNTA 

       430        440 
ISERALADLT TFKDETLTVN N
Q88W23 in FASTA format

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