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UniProtKB/Swiss-Prot entry Q88P77


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name RLMF_PSEPK
Primary accession number Q88P77
Secondary accession numbers None
Integrated into Swiss-Prot on September 2, 2008
Sequence was last modified on June 1, 2003 (Sequence version 1)
Annotations were last modified on    November 4, 2008 (Entry version 23)
Name and origin of the protein
Protein name Ribosomal RNA large subunit methyltransferase F
Synonyms EC 2.1.1.48
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene name
Name: rlmF
OrderedLocusNames: PP_0976
From
Pseudomonas putida (strain KT2440) [TaxID: 160488] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1046/j.1462-2920.2002.00366.x; PubMed=12534463 [NCBI, ExPASy, EBI, Israel, Japan]
Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A.P., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Kolonay J.F., Madupu R., Nelson W.C., White O., Peterson J.D., Khouri H.M., Hance I., Chris Lee P., Holtzapple E.K., Scanlan D., Tran K., Moazzez A., Utterback T.R., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Duesterhoeft A., Tuemmler B., Fraser C.M.;
"Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.";
Environ. Microbiol. 4:799-808(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE015451; AAN66601.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_743137.1; -.
3D structure databases
ModBase Q88P77.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008988; Molecular function: rRNA (adenine-N6-)-methyltransferase activity (inferred from electronic annotation from HAMAP).
GO:0006364; Biological process: rRNA processing (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_01848; -; 1.
PBIL [Tree]
InterPro IPR016909; S-AdoMet-dep_MeTrfase_YbiN_prd.
IPR010286; SAM-Mtase_prd.
Graphical view of domain structure.
PANTHER PTHR13393; DUF890; 1.
Pfam PF05971; Methyltransf_10; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF029038; Mtase_YbiN_prd; 1.
BLOCKS Q88P77.
ProtoNet Q88P77.
Genome annotation databases
GeneID 1044897; -.
GenomeReviews AE015451_GR; PP_0976.
KEGG ppu:PP_0976; -.
NMPDR fig|160488.1.peg.967; -.
TIGR PP_0976; -.
Phylogenomic databases
HOGENOM Q88P77; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Methyltransferase; rRNA processing; S-adenosyl-L-methionine; Transferase.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   317  317     Ribosomal RNA large subunit methyltransferase F. PRO_0000349934
Sequence information
Length: 317 AA [This is the length of the unprocessed precursor] Molecular weight: 35187 Da [This is the MW of the unprocessed precursor] CRC64: ABB77F17CA7B2D3C [This is a checksum on the sequence]
        10         20         30         40         50         60 
MTPNKPTLHP RNRHQGRYDF PSLIKAHPDL ARFTITNPHG KPSIDFANPE AVRVFNRALL 

        70         80         90        100        110        120 
KAQYGIQHWD IPADYLCPPI PGRADYIHVA ADLLADDNAG DVPRGAQVRA LDIGVGANCI 

       130        140        150        160        170        180 
YPLLGYSDYR WRFLGSDIDP VALASAKAIV QANGLGKAIT LRQQANRAHI LSGLLQEGER 

       190        200        210        220        230        240 
FDLTLCNPPF HASRDEATRG SQRKWKNLGK QDPKRKLPVL NFGGQNNELW CEGGEIRFVT 

       250        260        270        280        290        300 
QLIGESVQYA ERVLWFTSLV SKASNLPGIE AALKKSGAKA VRIIEMGQGQ KQSRMVAWSF 

       310 
LDDAARQAWH AQRKSQA 

Q88P77 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

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