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UniProtKB/Swiss-Prot entry Q88B49


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name HEM6_PSESM
Primary accession number Q88B49
Secondary accession numbers None
Integrated into Swiss-Prot on November 14, 2003
Sequence was last modified on June 1, 2003 (Sequence version 1)
Annotations were last modified on    November 4, 2008 (Entry version 41)
Name and origin of the protein
Protein name Coproporphyrinogen 3 oxidase, aerobic
Synonyms EC 1.3.3.3
Coproporphyrinogen III oxidase, aerobic
Coproporphyrinogenase
Coprogen oxidase
Gene name
Name: hemF
OrderedLocusNames: PSPTO_0170
From
Pseudomonas syringae pv. tomato [TaxID: 323] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=DC3000;
DOI=10.1073/pnas.1731982100; PubMed=12928499 [NCBI, ExPASy, EBI, Israel, Japan]
Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N., Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A.;
"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.";
Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE016853; AAO53724.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_790029.1; -.
3D structure databases
SMR Q88B49; 1-301.
ModBase Q88B49.
Enzyme and pathway databases
BioCyc PSYR223283:PSPTO_0170-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0004109; Molecular function: coproporphyrinogen oxidase activity (inferred from electronic annotation from HAMAP).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0006779; Biological process: porphyrin biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00333; -; 1.
PBIL [Tree]
InterPro IPR001260; Coprogen_oxidas.
Graphical view of domain structure.
Gene3D G3DSA:3.40.1500.10; Coprogen_oxidas; 1.
PANTHER PTHR10755; Coprogen_oxidas; 1.
Pfam PF01218; Coprogen_oxidas; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000166; Coproporphyri_ox; 1.
PRINTS PR00073; COPRGNOXDASE.
PROSITE PS01021; COPROGEN_OXIDASE; 1.
BLOCKS Q88B49.
ProtoNet Q88B49.
Genome annotation databases
GeneID 1181778; -.
GenomeReviews AE016853_GR; PSPTO_0170.
KEGG pst:PSPTO_0170; -.
NMPDR fig|223283.1.peg.167; -.
TIGR PSPTO_0170; -.
Phylogenomic databases
HOGENOM Q88B49; -.
Other
LinkHub Q88B49; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Cytoplasm; Oxidoreductase; Porphyrin biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   304  304     Coproporphyrinogen 3 oxidase, aerobic. PRO_0000109912
Sequence information
Length: 304 AA [This is the length of the unprocessed precursor] Molecular weight: 34501 Da [This is the MW of the unprocessed precursor] CRC64: 4087748F13C31B72 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSTRTEAVKA YLLDLQDRIC TALEQEDGNA HFVEDAWTRP AGGGGRTRVV ENGAVIEKGG 

        70         80         90        100        110        120 
VNFSHVFGSN LPPSASAHRP ELAGRGFEAL GVSLVIHPHS PHVPTSHANV RFFIAEKEGE 

       130        140        150        160        170        180 
EPVWWFGGGF DLTPYYGVEE DCVHWHRVAE RACAPFGDDV YPRYKAWCDS YFHLKHRDEP 

       190        200        210        220        230        240 
RGIGGLFFDD VNQWDFDTSF AFIRAIGDAF INAYLPIVRR RKAAAYTVQQ REFQEFRRGR 

       250        260        270        280        290        300 
YVEFNLVYDR GTLFGLQSGG RTESILMSLP PQVRWGYDWK AAPGSEEARL TDYFLTDRDW 


LADN 

Q88B49 in FASTA format

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