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UniProtKB/Swiss-Prot entry Q87XJ6

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDLA_PSESM
Primary accession number Q87XJ6
Secondary accession numbers None
Integrated into Swiss-Prot on December 15, 2003
Sequence was last modified on June 1, 2003 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 43)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase A
Synonyms EC 6.3.2.4
D-alanylalanine synthetase A
D-Ala-D-Ala ligase A
Gene name
Name: ddlA
OrderedLocusNames: PSPTO_4182
From
Pseudomonas syringae pv. tomato [TaxID: 323] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=DC3000;
DOI=10.1073/pnas.1731982100; PubMed=12928499 [NCBI, ExPASy, EBI, Israel, Japan]
Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N., Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A.;
"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.";
Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE016853; AAO57638.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_793943.1; -.
3D structure databases
HSSP P25051; 1E4E. [HSSP ENTRY / PDB]
ModBase Q87XJ6.
Enzyme and pathway databases
BioCyc PSYR223283:PSPTO_4182-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q87XJ6.
Genome annotation databases
GeneID 1185862; -.
GenomeReviews AE016853_GR; PSPTO_4182.
KEGG pst:PSPTO_4182; -.
NMPDR fig|223283.1.peg.4081; -.
TIGR PSPTO_4182; -.
Phylogenomic databases
HOGENOM Q87XJ6; -.
Other
ProtoNet Q87XJ6.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   363  363     D-alanine--D-alanine ligase A. PRO_0000177859
DOMAIN   144   345  202     ATP-grasp. 
NP_BIND   172   227  56     ATP (By similarity). 
METAL   299   299        Magnesium or manganese 1 (By similarity). 
METAL   312   312        Magnesium or manganese 1 (By similarity). 
METAL   312   312        Magnesium or manganese 2 (By similarity). 
METAL   314   314        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 363 AA [This is the length of the unprocessed precursor] Molecular weight: 38948 Da [This is the MW of the unprocessed precursor] CRC64: 8E9772ACDAB380FF [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MKKSVAIVFG GQSSEHEVSL QSARNVINAI DRESYALTLI GVDKLGRWLR FDEADYLLNA 

        70         80         90        100        110        120 
NDPARIKLSG SGKQLSLLPG SVGGQFVEVE SGKPLAAIDV VFPLIHGAFG EDGALQGLLR 

       130        140        150        160        170        180 
MLAVPFVGAD VLASAACMDK DVTKRLLRDA GIAVAPFMVL NRGESLSFAQ AAAQLSLPMF 

       190        200        210        220        230        240 
VKPANQGSSV GVSKVSDEAG FAAALALGFE FDHKLLIEQG IVGREVECAV LGNDEAQVSV 

       250        260        270        280        290        300 
CGEVVANDEF YAYDTKYLNG DQARIAIPAE LPADLSDQVR DVALQAYKVL GCAGLSRVDF 

       310        320        330        340        350        360 
FVTEAREIII NEVNTLPGFT SISMYPKLWQ ATGLSYAELI HRLIVLALER ADEARLLKRD 


IFA
Q87XJ6 in FASTA format

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