[1]
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NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), GENE FAMILY, AND NOMENCLATURE.
DOI=10.1093/molbev/msg088; PubMed=12679534 [NCBI, ExPASy, EBI, Israel, Japan]
Heim M.A.,
Jakoby M.,
Werber M.,
Martin C.,
Weisshaar B.,
Bailey P.C.;
"The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.";
Mol. Biol. Evol. 20:735-747(2003).
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[2]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1), FUNCTION, INDUCTION, AND INTERACTION WITH TOC1/APRR1.
STRAIN=cv. Columbia;
DOI=10.1093/pcp/pcg078; PubMed=12826627 [NCBI, ExPASy, EBI, Israel, Japan]
Yamashino T.,
Matsushika A.,
Fujimori T.,
Sato S.,
Kato T.,
Tabata S.,
Mizuno T.;
"A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana.";
Plant Cell Physiol. 44:619-629(2003).
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[3]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M.,
Lemcke K.,
Rieger M.,
Ansorge W.,
Unseld M.,
Fartmann B.,
Valle G.,
Bloecker H.,
Perez-Alonso M.,
Obermaier B.,
Delseny M.,
Boutry M.,
Grivell L.A.,
Mache R.,
Puigdomenech P.,
De Simone V.,
Choisne N.,
Artiguenave F.,
Robert C., ![]()
Brottier P.,
Wincker P.,
Cattolico L.,
Weissenbach J.,
Saurin W.,
Quetier F.,
Schaefer M.,
Mueller-Auer S.,
Gabel C.,
Fuchs M.,
Benes V.,
Wurmbach E.,
Drzonek H.,
Erfle H.,
Jordan N.,
Bangert S.,
Wiedelmann R.,
Kranz H.,
Voss H.,
Holland R.,
Brandt P.,
Nyakatura G.,
Vezzi A.,
D'Angelo M.,
Pallavicini A.,
Toppo S.,
Simionati B.,
Conrad A.,
Hornischer K.,
Kauer G.,
Loehnert T.-H.,
Nordsiek G.,
Reichelt J.,
Scharfe M.,
Schoen O.,
Bargues M.,
Terol J.,
Climent J.,
Navarro P.,
Collado C.,
Perez-Perez A.,
Ottenwaelder B.,
Duchemin D.,
Cooke R.,
Laudie M.,
Berger-Llauro C.,
Purnelle B.,
Masuy D.,
de Haan M.,
Maarse A.C.,
Alcaraz J.-P.,
Cottet A.,
Casacuberta E.,
Monfort A.,
Argiriou A.,
Flores M.,
Liguori R.,
Vitale D.,
Mannhaupt G.,
Haase D.,
Schoof H.,
Rudd S.,
Zaccaria P.,
Mewes H.-W.,
Mayer K.F.X.,
Kaul S.,
Town C.D.,
Koo H.L.,
Tallon L.J.,
Jenkins J.,
Rooney T.,
Rizzo M.,
Walts A.,
Utterback T.,
Fujii C.Y.,
Shea T.P.,
Creasy T.H.,
Haas B.,
Maiti R.,
Wu D.,
Peterson J.,
Van Aken S.,
Pai G.,
Militscher J.,
Sellers P.,
Gill J.E.,
Feldblyum T.V.,
Preuss D.,
Lin X.,
Nierman W.C.,
Salzberg S.L.,
White O.,
Venter J.C.,
Fraser C.M.,
Kaneko T.,
Nakamura Y.,
Sato S.,
Kato T.,
Asamizu E.,
Sasamoto S.,
Kimura T.,
Idesawa K.,
Kawashima K.,
Kishida Y.,
Kiyokawa C.,
Kohara M.,
Matsumoto M.,
Matsuno A.,
Muraki A.,
Nakayama S.,
Nakazaki N.,
Shinpo S.,
Takeuchi C.,
Wada T.,
Watanabe A.,
Yamada M.,
Yasuda M.,
Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
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[4]
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NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K.,
Lim J.,
Dale J.M.,
Chen H.,
Shinn P.,
Palm C.J.,
Southwick A.M.,
Wu H.C.,
Kim C.J.,
Nguyen M.,
Pham P.K.,
Cheuk R.F.,
Karlin-Newmann G.,
Liu S.X.,
Lam B.,
Sakano H.,
Wu T.,
Yu G.,
Miranda M., ![]()
Quach H.L.,
Tripp M.,
Chang C.H.,
Lee J.M.,
Toriumi M.J.,
Chan M.M.,
Tang C.C.,
Onodera C.S.,
Deng J.M.,
Akiyama K.,
Ansari Y.,
Arakawa T.,
Banh J.,
Banno F.,
Bowser L.,
Brooks S.Y.,
Carninci P.,
Chao Q.,
Choy N.,
Enju A.,
Goldsmith A.D.,
Gurjal M.,
Hansen N.F.,
Hayashizaki Y.,
Johnson-Hopson C.,
Hsuan V.W.,
Iida K.,
Karnes M.,
Khan S.,
Koesema E.,
Ishida J.,
Jiang P.X.,
Jones T.,
Kawai J.,
Kamiya A.,
Meyers C.,
Nakajima M.,
Narusaka M.,
Seki M.,
Sakurai T.,
Satou M.,
Tamse R.,
Vaysberg M.,
Wallender E.K.,
Wong C.,
Yamamura Y.,
Yuan S.,
Shinozaki K.,
Davis R.W.,
Theologis A.,
Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
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[5]
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FUNCTION, MUTAGENESIS OF GLU-31; LEU-32; GLY-37 AND GLN-38, AND INTERACTION WITH PHYB.
DOI=10.1105/tpc.104.025643; PubMed=15486100 [NCBI, ExPASy, EBI, Israel, Japan]
Khanna R.,
Huq E.,
Kikis E.A.,
Al-Sady B.,
Lanzatella C.,
Quail P.H.;
"A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors.";
Plant Cell 16:3033-3044(2004).
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[6]
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FUNCTION, DEVELOPMENTAL STAGE, AND INTERACTION WITH TOC1/APRR1 AND PIF3.
DOI=10.1093/pcp/pch124; PubMed=15356333 [NCBI, ExPASy, EBI, Israel, Japan]
Fujimori T.,
Yamashino T.,
Kato T.,
Mizuno T.;
"Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana.";
Plant Cell Physiol. 45:1078-1086(2004).
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[7]
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FUNCTION, AND INDUCTION.
DOI=10.1038/nature05946; PubMed=17589502 [NCBI, ExPASy, EBI, Israel, Japan]
Nozue K.,
Covington M.F.,
Duek P.D.,
Lorrain S.,
Fankhauser C.,
Harmer S.L.,
Maloof J.N.;
"Rhythmic growth explained by coincidence between internal and external cues.";
Nature 448:358-361(2007).
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[8]
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FUNCTION, AND MUTAGENESIS OF GLY-37.
DOI=10.1105/tpc.107.051508; PubMed=18065691 [NCBI, ExPASy, EBI, Israel, Japan]
Khanna R.,
Shen Y.,
Marion C.M.,
Tsuchisaka A.,
Theologis A.,
Schaefer E.,
Quail P.H.;
"The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms.";
Plant Cell 19:3915-3929(2007).
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[9]
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PHOSPHORYLATION.
DOI=10.1104/pp.107.105601; PubMed=17827270 [NCBI, ExPASy, EBI, Israel, Japan]
Shen Y.,
Khanna R.,
Carle C.M.,
Quail P.H.;
"Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation.";
Plant Physiol. 145:1043-1051(2007).
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[10]
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FUNCTION, PHOSPHORYLATION, AND INDUCTION.
DOI=10.1111/j.1365-313X.2007.03341.x; PubMed=18047474 [NCBI, ExPASy, EBI, Israel, Japan]
Lorrain S.,
Allen T.,
Duek P.D.,
Whitelam G.C.,
Fankhauser C.;
"Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors.";
Plant J. 53:312-323(2008).
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