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UniProtKB/Swiss-Prot entry Q7X7E9

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DNL4_ORYSJ
Primary accession number Q7X7E9
Secondary accession numbers None
Integrated into Swiss-Prot on July 25, 2006
Sequence was last modified on July 5, 2004 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 28)
Name and origin of the protein
Protein name Putative DNA ligase 4
Synonyms EC 6.5.1.1
DNA ligase IV
Polydeoxyribonucleotide synthase [ATP] 4
Gene name
Name: LIG4
OrderedLocusNames: LOC_Os04g51700
ORFNames: OSJNBa0035M09.8
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature01183; PubMed=12447439 [NCBI, ExPASy, EBI, Israel, Japan]
Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y., Han B.;
"Sequence and analysis of rice chromosome 4.";
Nature 420:316-320(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL662968; CAD41778.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
UniGene Os.53597
3D structure databases
ModBase Q7X7E9.
Organism-specific databases
Gramene Q7X7E9; -.
Family and domain databases
InterPro IPR001357; BRCT.
IPR000977; DNA_ligase.
IPR012309; DNA_ligase_A_C.
IPR012310; DNA_ligase_A_M.
IPR016059; DNA_ligase_CS.
IPR012340; NA-bd_OB-fold.
Graphical view of domain structure.
Gene3D G3DSA:2.40.50.140; OB_NA_bd_sub; 1.
Pfam PF04679; DNA_ligase_A_C; 1.
PF01068; DNA_ligase_A_M; 2.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00574; dnl1; 1.
PROSITE PS50172; BRCT; 2.
PS00697; DNA_LIGASE_A1; 1.
PS00333; DNA_LIGASE_A2; 1.
PS50160; DNA_LIGASE_A3; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q7X7E9.
Other
ProtoNet Q7X7E9.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; DNA damage; DNA recombination; DNA repair; DNA replication; Ligase; Nucleotide-binding; Nucleus; Repeat.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   1322  1322     Putative DNA ligase 4. PRO_0000247468
DOMAIN   686    768  83     BRCT 1. 
DOMAIN   825    935  111     BRCT 2. 
ACT_SITE   267    267        N6-AMP-lysine intermediate (By similarity). 
Sequence information
Length: 1322 AA [This is the length of the unprocessed precursor] Molecular weight: 149078 Da [This is the MW of the unprocessed precursor] CRC64: 110BF7B94DB62A67 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MAATVRFGLL VAMFQAMSRD RTAAKKRARL RALLDRAYGP GGRDDYFSAL RLVLPGLDRE 

        70         80         90        100        110        120 
RGSYGLKEAA LASVLVDALG IAKDSPDAVR LTNWRRGGGF RNAGNFALVA AEVLQRRQGM 

       130        140        150        160        170        180 
TSGGLTIKEV NDALDRLAAT ENSVCLESEK LLLILDRSEK ASILSSLIKK TNALEMKWLL 

       190        200        210        220        230        240 
MIILKDLKLG ISEKSVFHEF HPDAEDLFNV TCDLRLVCEK LNDRSQRHKR QDIEVGKAVR 

       250        260        270        280        290        300 
PQLSMRVNNA SSAWKKLHGK QVVAECKFDG DRIQIHKNGE EIHFFSRSFL DHSEYAPGMS 

       310        320        330        340        350        360 
KVIIENILVD RCILDGEMLV WDTVLNRFAE FGSNQEIAKA AKEGLETDRQ LCCILEWIAS 

       370        380        390        400        410        420 
YVLALCVNIL SCQDFFFSNK RESYVAFDIL YAGDTSVIHQ SLTERHEILQ KVVRPLKGHL 

       430        440        450        460        470        480 
EILVPTGGLN IHRPPDEPCW SILAHSLDDV EKFFKDTVDN RFFPTSPNTD ELSNLSISLM 

       490        500        510        520        530        540 
IQFRFSDYSI CYVLREEGII LKDLESKWEP GDRSGKWLKL KPDYIHAGAD LDVIIIGGYY 

       550        560        570        580        590        600 
GSGRRGGEVA QFLVGLAVPS DDNSYPKRFL SFCRVGTGLS DEELDALVTK LKPHFRKNEY 

       610        620        630        640        650        660 
PKKPPRFYEV TNHSKERPDV WIESPDKQSV RFRKHLIYCI TKCRSVIISI TSDIRTIKSE 

       670        680        690        700        710        720 
VFAAPYSLRF PRIQRLRYDK PWHECLDVQA FVDIVHSSNG TTHRAADDDN DLKNVKNGGS 

       730        740        750        760        770        780 
FSMNLNDSVT HCIAAEKKAT RQGRIIHYSW ILDCCKEKRL LHLQPKFDPC LQPMHKFPEE 

       790        800        810        820        830        840 
IDSYADYFYW DIDISDLKQI FSNMDRAVVD SNMVHHYKKK YCADERFCFF QGCCVYFYHA 

       850        860        870        880        890        900 
PLVNADYNVI SDLALKRVKQ DLTMHGGQVC SILAPATHLI IVSVLQAYNF DMLYKSLPPA 

       910        920        930        940        950        960 
ERRYLHDKRL QVVSNKWLED SVEKQTRLPE TTYSLKPDTL EEIEIERSEE TVQPCNDKLE 

       970        980        990       1000       1010       1020 
ENEKADTSHV KHAPRKRGRP SSSASRTAKP APRPVRRTRA RRGNQHAKID DVEPEESDHG 

      1030       1040       1050       1060       1070       1080 
ETGLDDQIPD TDNISKMEVD SFDKDQVSAR PVRRTRARRG KQHAKIDYGQ SEESDPGETG 

      1090       1100       1110       1120       1130       1140 
QDDQRLDADY ISKMEEDSSD RDQGAHPTAP RVVRRSRAQR GKWLAKIDRE TGPGETGQDD 

      1150       1160       1170       1180       1190       1200 
KKLNADSISK MEEHAHDKDQ EPPPGAQLIT LDEQEPKGIK SSTTETPSSP KHERNQTVLR 

      1210       1220       1230       1240       1250       1260 
RDTAETTSSA TCEKMEQMVD PLHAMLLDMI PSLGQMKTDV GNRVAEAKAE TNPPWVGSST 

      1270       1280       1290       1300       1310       1320 
SSYVAPVPQA SASSASSSGV PAPHAGSSTQ STGVPAPDPT AGAPKKKKVS YKDVAGALLK 


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Q7X7E9 in FASTA format

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