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UniProtKB/Swiss-Prot entry Q6F705

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_ACIAD
Primary accession number Q6F705
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on July 19, 2004 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 37)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: ACIAD3515
From
Acinetobacter sp. (strain ADP1) [TaxID: 62977] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1093/nar/gkh910; PubMed=15514110 [NCBI, ExPASy, EBI, Israel, Japan]
Barbe V., Vallenet D., Fonknechten N., Kreimeyer A., Oztas S., Labarre L., Cruveiller S., Robert C., Duprat S., Wincker P., Ornston L.N., Weissenbach J., Marliere P., Cohen G.N., Medigue C.;
"Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium.";
Nucleic Acids Res. 32:5766-5779(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CR543861; CAG70160.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_047982.1; -.
3D structure databases
ModBase Q6F705.
Enzyme and pathway databases
BioCyc ASP62977:ACIAD3515-MONOMER; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q6F705.
Genome annotation databases
GeneID 2881096; -.
GenomeReviews CR543861_GR; ACIAD3515.
KEGG aci:ACIAD3515; -.
NMPDR fig|62977.3.peg.3175; -.
Phylogenomic databases
HOGENOM Q6F705; -.
Genome annotation databases
CMR Q6F705; ACIAD3515.
Other
ProtoNet Q6F705.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   309  309     D-alanine--D-alanine ligase. PRO_0000341046
DOMAIN   104   301  198     ATP-grasp. 
NP_BIND   130   185  56     ATP (By similarity). 
METAL   255   255        Magnesium or manganese 1 (By similarity). 
METAL   268   268        Magnesium or manganese 1 (By similarity). 
METAL   268   268        Magnesium or manganese 2 (By similarity). 
METAL   270   270        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 309 AA [This is the length of the unprocessed precursor] Molecular weight: 33434 Da [This is the MW of the unprocessed precursor] CRC64: 25B74A464E42C3B8 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSNASKFGKV AVLFGGKSAE RDVSLDSGQA VLDALLRSGV QAEAFDPKER SVTELVGYDR 

        70         80         90        100        110        120 
AFIVLHGRGG EDGQIQGVLE WLDIPYTGTG VQGSAIGMDK IKTKQIWQGS DLPTAPYRIV 

       130        140        150        160        170        180 
SKDSDLNEIV ASLGLPVIIK PVHEGSSIGM SKVEKIEDFA PAIEKATAHD AIVMAEKWIT 

       190        200        210        220        230        240 
GREYTIVVLN GKALPVIRLQ PPQDVAFYDY DAKYQRNDVQ YGIPSGLSDS DEKKLQELTL 

       250        260        270        280        290        300 
RAFHTVGASG WGRVDAMQDE HGNFWLLEIN TVPGMTSHSL VPKAAQAIGI DFDALCVEIL 


AQTLTGLAH
Q6F705 in FASTA format

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