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UniProtKB/Swiss-Prot entry Q5WDW9

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_BACSK
Primary accession number Q5WDW9
Secondary accession numbers None
Integrated into Swiss-Prot on February 5, 2008
Sequence was last modified on November 23, 2004 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 33)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: ABC2907
From
Bacillus clausii (strain KSM-K16) [TaxID: 66692] [HAMAP proteome]
Taxonomy Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Takaki Y., Kageyama Y., Shimamura S., Suzuki H., Nishi S., Hatada Y., Kawai S., Ito S., Horikoshi K.;
"The complete genome sequence of the alkaliphilic Bacillus clausii KSM-K16.";
Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP006627; BAD65441.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_176402.1; -.
3D structure databases
ModBase Q5WDW9.
Enzyme and pathway databases
BioCyc BCLA66692:ABC2907-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q5WDW9.
Genome annotation databases
GeneID 3203892; -.
GenomeReviews AP006627_GR; ABC2907.
KEGG bcl:ABC2907; -.
NMPDR fig|66692.3.peg.2796; -.
Phylogenomic databases
HOGENOM Q5WDW9; -.
Genome annotation databases
CMR Q5WDW9; ABC2907.
Other
ProtoNet Q5WDW9.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   368  368     D-alanine--D-alanine ligase. PRO_1000057321
DOMAIN   145   348  204     ATP-grasp. 
NP_BIND   175   230  56     ATP (By similarity). 
METAL   302   302        Magnesium or manganese 1 (By similarity). 
METAL   315   315        Magnesium or manganese 1 (By similarity). 
METAL   315   315        Magnesium or manganese 2 (By similarity). 
METAL   317   317        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 368 AA [This is the length of the unprocessed precursor] Molecular weight: 40081 Da [This is the MW of the unprocessed precursor] CRC64: 081C342A37B1F811 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MAKKRVGIIF GGKSAEHEVS LQSAKNIVEA IDKDRFDVTL IGIDKQGQWH INEASNFLLN 

        70         80         90        100        110        120 
ADNPALIELN KSNQGVALIP GKEDRQLVGT ANQSVLDQLD VVFPIVHGTL GEDGSLQGMF 

       130        140        150        160        170        180 
RLANLPFVGS NVLGSAVSMD KDIAKRLLQG AGLHVASGLT FTRAAKETID FESIADQLGL 

       190        200        210        220        230        240 
PLFIKPANQG SSVGVNKATT EAEFTAAIEE AFSYDHKVLI EAAIKGREIE CAVLGNDYPK 

       250        260        270        280        290        300 
ASTCGEILPQ DGFYSYDAKY IDEDGAKLAI PADLPEDVNR RIQDIAIQAY KTLNCEGLAR 

       310        320        330        340        350        360 
VDVFLTETGE VIINEVNTLP GFTKISMYPK LWEASGVSYQ DLITTLIELA IERHERDKQL 


KSSVFDRN
Q5WDW9 in FASTA format

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