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UniProtKB/Swiss-Prot entry Q5P6Z8

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_AZOSE
Primary accession number Q5P6Z8
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on January 4, 2005 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 35)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: AZOSEA07900
ORFNames: ebA1442
From
Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) [TaxID: 76114] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1007/s00203-004-0742-9; PubMed=15551059 [NCBI, ExPASy, EBI, Israel, Japan]
Rabus R., Kube M., Heider J., Beck A., Heitmann K., Widdel F., Reinhardt R.;
"The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1.";
Arch. Microbiol. 183:27-36(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CR555306; CAI06913.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_157814.1; -.
3D structure databases
ModBase Q5P6Z8.
Enzyme and pathway databases
BioCyc ASP76114:EBA1442-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q5P6Z8.
Genome annotation databases
GeneID 3180137; -.
GenomeReviews CR555306_GR; AZOSEA07900.
KEGG eba:ebA1442; -.
NMPDR fig|76114.4.peg.2392; -.
Phylogenomic databases
HOGENOM Q5P6Z8; -.
Genome annotation databases
CMR Q5P6Z8; AZOSEA07900.
Other
ProtoNet Q5P6Z8.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   309  309     D-alanine--D-alanine ligase. PRO_0000341056
DOMAIN   109   304  196     ATP-grasp. 
NP_BIND   135   190  56     ATP (By similarity). 
METAL   258   258        Magnesium or manganese 1 (By similarity). 
METAL   271   271        Magnesium or manganese 1 (By similarity). 
METAL   271   271        Magnesium or manganese 2 (By similarity). 
METAL   273   273        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 309 AA [This is the length of the unprocessed precursor] Molecular weight: 32762 Da [This is the MW of the unprocessed precursor] CRC64: 19BE2E8E1B3EB6A5 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MRGNGVGAKF GKVAVLLGGT SAEREVSLMS GGAVLAALQA AGVDAHGFDP AQQDLHILKE 

        70         80         90        100        110        120 
QGFDRAFIAL HGRGGEDGTV QGLLELLKIP YTGSGVMASA LAMDKWRTKM VWAACGLPTP 

       130        140        150        160        170        180 
RYAILAGDTD WEAVVAELGL PIFVKPVHEG SSMGATKVTA ASQLKAAWER AARFDDLVLA 

       190        200        210        220        230        240 
EEFIVGAELT VPFLAERALP VIRIEAPGGK YDYQNKYFTD ETRYLCPSGL PAEQEQALQA 

       250        260        270        280        290        300 
LVMKSARALG CRGWGRADLM LTGDGRPYLL EMNTSPGMTG HSLVPMAAKA VGLDFTALCL 


AILEDARLG
Q5P6Z8 in FASTA format

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