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UniProtKB/Swiss-Prot entry Q49AH0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ARMEL_HUMAN
Primary accession number Q49AH0
Secondary accession number A2RUU0
Integrated into Swiss-Prot on April 3, 2007
Sequence was last modified on April 3, 2007 (Sequence version 2)
Annotations were last modified on    June 16, 2009 (Entry version 22)
Name and origin of the protein
Protein name ARMET-like protein 1 [Precursor]
Synonyms Conserved dopamine neurotrophic factor
CDNF
Gene name
Name: ARMETL1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
TISSUE=Testis;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[2]
SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
DOI=10.1038/nature05957; PubMed=17611540 [NCBI, ExPASy, EBI, Israel, Japan]
Lindholm P., Voutilainen M.H., Lauren J., Peraenen J., Leppaenen V.-M., Andressoo J.-O., Lindahl M., Janhunen S., Kalkkinen N., Timmusk T., Tuominen R.K., Saarma M.;
"Novel neurotrophic factor CDNF protects and rescues midbrain dopamine neurons in vivo.";
Nature 448:73-77(2007).
Comments
  • FUNCTION: Trophic factor for dopamine neurons. Prevents the 6-hydroxydopamine (6-OHDA)-induced degeneration of dopaminergic neurons. When administered after 6-OHDA-lesioning, restores the dopaminergic function and prevents the degeneration of dopaminergic neurons in substantia nigra (By similarity).
  • SUBCELLULAR LOCATION: Secreted.
  • ALTERNATIVE PRODUCTS: 2 named isoforms [FASTA] produced by alternative splicing.
    Name1
    Isoform IDQ49AH0-1
    This is the isoform sequence displayed in this entry.
    Name2
    Isoform IDQ49AH0-2
    Note: No experimental confirmation available.
    Features which should be applied to build the isoform sequence: VSP_023986.
  • TISSUE SPECIFICITY: Widely expressed in neuronal and non-neuronal tissues. In the brain, highest levels in the optic nerve and corpus callosum.
  • SIMILARITY: Belongs to the ARMET family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BC037872; AAH37872.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC133042; AAI33043.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC133044; AAI33045.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00646351; -.
IPI00647956; -.
RefSeq NP_001025125.2; -.
UniGene Hs.559067
3D structure databases
PDB
2W50; X-ray; 1.60 A; A/B=32-133.[ExPASy / RCSB / EBI]
PDBsum 2W50; -.
ModBase Q49AH0.
PTM databases
PhosphoSite Q49AH0; -.
Organism-specific databases
GeneCards GC10M014866; -.
HGNC HGNC:24913; ARMETL1.
GenAtlas ARMETL1.
MIM 611233; gene. [NCBI / EBI]
PharmGKB PA134870440; -.
Gene expression databases
ArrayExpress Q49AH0; -.
Bgee Q49AH0; -.
CleanEx HS_ARMETL1; -.
Ontologies
GO
GO:0005576; Cellular component: extracellular region (inferred from electronic annotation from UniProtKB-SubCell).
GO:0008083; Molecular function: growth factor activity (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR019345; Armet_prot.
Graphical view of domain structure.
Pfam PF10208; Armet; 1.
Pfam graphical view of domain structure.
Proteomic databases
PRIDE Q49AH0; -.
Genome annotation databases
Ensembl ENSG00000185267; Homo sapiens. [Contig view]
GeneID 441549; -.
KEGG hsa:441549; -.
Phylogenomic databases
HOVERGEN Q49AH0; -.
OMA Q49AH0; GADCEVC.
Other
NextBio 110303; -.
SOURCE ARMETL1; Homo sapiens.
ProtoNet Q49AH0.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Alternative splicing; Growth factor; Secreted; Signal.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
SIGNAL   1    24  24     Potential. 
CHAIN   25   187  163     ARMET-like protein 1. PRO_0000281137
VAR_SEQ   1   102        Missing (in isoform 2). VSP_023986
Sequence information
Length: 187 AA [This is the length of the unprocessed precursor] Molecular weight: 20964 Da [This is the MW of the unprocessed precursor] CRC64: 87460391592A10CA [This is a checksum on the sequence]
        10         20         30         40         50         60 
MWCASPVAVV AFCAGLLVSH PVLTQGQEAG GRPGADCEVC KEFLNRFYKS LIDRGVNFSL 

        70         80         90        100        110        120 
DTIEKELISF CLDTKGKENR LCYYLGATKD AATKILSEVT RPMSVHMPAM KICEKLKKLD 

       130        140        150        160        170        180 
SQICELKYEK TLDLASVDLR KMRVAELKQI LHSWGEECRA CAEKTDYVNL IQELAPKYAA 


THPKTEL 

Q49AH0 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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