ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry Q492J5

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name DDL_BLOPB
Primary accession number Q492J5
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on September 13, 2005 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 30)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: BPEN_490
From
Blochmannia pennsylvanicus (strain BPEN) [TaxID: 291272] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; ant endosymbionts; Candidatus Blochmannia.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1101/gr.3771305; PubMed=16077009 [NCBI, ExPASy, EBI, Israel, Japan]
Degnan P.H., Lazarus A.B., Wernegreen J.J.;
"Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.";
Genome Res. 15:1023-1033(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000016; AAZ41104.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_277981.1; -.
3D structure databases
ModBase Q492J5.
Enzyme and pathway databases
BioCyc CBLO291272:BPEN_490-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q492J5.
Genome annotation databases
GeneID 3562997; -.
GenomeReviews CP000016_GR; BPEN_490.
KEGG bpn:BPEN_490; -.
Phylogenomic databases
HOGENOM Q492J5; -.
Genome annotation databases
CMR Q492J5; BPEN_490.
Other
ProtoNet Q492J5.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   368  368     D-alanine--D-alanine ligase. PRO_0000341060
DOMAIN   137   340  204     ATP-grasp. 
NP_BIND   167   222  56     ATP (By similarity). 
METAL   294   294        Magnesium or manganese 1 (By similarity). 
METAL   307   307        Magnesium or manganese 1 (By similarity). 
METAL   307   307        Magnesium or manganese 2 (By similarity). 
METAL   309   309        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 368 AA [This is the length of the unprocessed precursor] Molecular weight: 41585 Da [This is the MW of the unprocessed precursor] CRC64: F4BD5CA22F70A2E4 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSKLCIGIIC GGRSLEHEIS LKSAMCIAQF IDKFRFEAMI LWIDKKGCWH LKDIDFNDLS 

        70         80         90        100        110        120 
YHKDEKISIL LQNCPYPFKF HTKNINILLK FDVIFPVVHG TLGEDGALQG LLCMMNLPFV 

       130        140        150        160        170        180 
GSNVLSSSVG MDKDVSKCLL RDAGLSVVPF RTVLAQDQHN IDFDYFVSIF GLPLFVKPSN 

       190        200        210        220        230        240 
QGSSIGVSKV TKCKDFNLAL IKAFSFSNKI LIEPAIIGRE LECAVLGNDN PKISVCGEVI 

       250        260        270        280        290        300 
LSDNNFYTYH DKYVKRKAQI MIPALINDAI SDDIRHIALR AFQVLNCSGM ARVDVFLNLD 

       310        320        330        340        350        360 
NKIFINEVNT LPGFTFDSMY PKLWEVSGLN LQELITKLVE LALDLHDKKN CFYHVDGAVL 


KYFRHERI
Q492J5 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA) 		Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Hosted by ch flag SIB Switzerland Mirror sites: Australia Brazil Canada China Korea
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!