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UniProtKB/Swiss-Prot entry Q2IG33

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_ANADE
Primary accession number Q2IG33
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on March 7, 2006 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 27)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: Adeh_3774
From
Anaeromyxobacter dehalogenans (strain 2CP-C) [TaxID: 290397] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Anaeromyxobacter.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M., Kyrpides N., Anderson I., Sanford R.A., Ritalahti K.M., Thomas H.S., Kirby J.R., Zhulin I.B., Loeffler F.E., Richardson P.;
"Complete sequence of Anaeromyxobacter dehalogenans 2CP-C.";
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000251; ABC83540.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_466977.1; -.
3D structure databases
ModBase Q2IG33.
Enzyme and pathway databases
BioCyc ADEH290397:ADEH_3774-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q2IG33.
Genome annotation databases
GeneID 3888271; -.
GenomeReviews CP000251_GR; Adeh_3774.
KEGG ade:Adeh_3774; -.
Phylogenomic databases
HOGENOM Q2IG33; -.
Genome annotation databases
CMR Q2IG33; Adeh_3774.
Other
ProtoNet Q2IG33.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   308  308     D-alanine--D-alanine ligase. PRO_0000341050
DOMAIN   105   302  198     ATP-grasp. 
NP_BIND   133   188  56     ATP (By similarity). 
METAL   256   256        Magnesium or manganese 1 (By similarity). 
METAL   269   269        Magnesium or manganese 1 (By similarity). 
METAL   269   269        Magnesium or manganese 2 (By similarity). 
METAL   271   271        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 308 AA [This is the length of the unprocessed precursor] Molecular weight: 32040 Da [This is the MW of the unprocessed precursor] CRC64: 139E9F21B9EE075E [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MSTWTGKRVA VLYGGRSSER EVSLRTGAAC AEALRQKGHD VVLVDVDLEV AARLRAERVE 

        70         80         90        100        110        120 
VAFVALHGRW GEDGSIQGLL ESMAIPYTGS GVLASAMGMD KTVSKAIFRS LGLAVADYRV 

       130        140        150        160        170        180 
FPRAAAGAIG VDDLPFGLPC VVKPAGEGSS VGVHLVNAAA ELGPACRDAA GYAGDVIVER 

       190        200        210        220        230        240 
YVKGTEVDVA VLEGKALGAI EIVPANAFYD YAAKYTAGTT KYFYPARIPE AHVRAVMEAA 

       250        260        270        280        290        300 
EAAHRGIGCS GVTRVDFIVA ADGTPYILEV NTLPGMTATS LVPKIAAGLG LSFPDLCDRI 


LDGAALKA
Q2IG33 in FASTA format

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