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UniProtKB/Swiss-Prot entry Q1QN15


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name RL6_NITHX
Primary accession number Q1QN15
Secondary accession numbers None
Integrated into Swiss-Prot on November 28, 2006
Sequence was last modified on May 16, 2006 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 20)
Name and origin of the protein
Protein name 50S ribosomal protein L6
Synonyms None
Gene name
Name: rplF
OrderedLocusNames: Nham_1560
From
Nitrobacter hamburgensis (strain X14 / DSM 10229) [TaxID: 323097] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Ward B., Arp D., Klotz M., Stein L., O'Mullan G., Starkenburg S., Sayavedra L., Poret-Peterson A.T., Gentry M.E., Bruce D., Richardson P.;
"Complete sequence of chromosome of Nitrobacter hamburgensis X14.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000319; ABE62382.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_576842.1; -.
3D structure databases
ModBase Q1QN15.
Enzyme and pathway databases
BioCyc NHAM323097:NHAM_1560-MON; -.
Ontologies
GO
GO:0005840; Cellular component: ribosome (inferred from electronic annotation from UniProtKB-KW).
GO:0019843; Molecular function: rRNA binding (inferred from electronic annotation from HAMAP).
GO:0003735; Molecular function: structural constituent of ribosome (inferred from electronic annotation from InterPro).
GO:0006412; Biological process: translation (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_01365; -; 1.
PBIL [Tree]
InterPro IPR000702; Ribosomal_L6.
IPR020040; Ribosomal_L6_a/b-dom.
IPR002358; Ribosomal_L6_CS.
IPR019906; Ribosomal_L6_sg.
Graphical view of domain structure.
Gene3D G3DSA:3.90.930.12; Ribosomal_L6; 2.
PANTHER PTHR11655; Ribosomal_L6; 1.
Pfam PF00347; Ribosomal_L6; 2.
Pfam graphical view of domain structure.
PIRSF PIRSF002162; Ribosomal_L6; 1.
PRINTS PR00059; RIBOSOMALL6.
ProDom PD002236; Ribosomal_L6; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR03654; L6_bact; 1.
PROSITE PS00525; RIBOSOMAL_L6_1; 1.
Genome annotation databases
GeneID 4033134; -.
GenomeReviews CP000319_GR; Nham_1560.
KEGG nha:Nham_1560; -.
NMPDR fig|323097.3.peg.1480; -.
Phylogenomic databases
HOGENOM Q1QN15; -.
OMA Q1QN15; RTLVANM.
Genome annotation databases
CMR Q1QN15; Nham_1560.
Other
ProtoNet Q1QN15.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding; rRNA-binding.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   177  177     50S ribosomal protein L6. PRO_0000260902
Sequence information
Length: 177 AA [This is the length of the unprocessed precursor] Molecular weight: 19122 Da [This is the MW of the unprocessed precursor] CRC64: DF442D8FF6553CD0 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSRIGKRPVT VPSGVTATVE GQTVRMKGPK GQLEFVVHND VEVKLENGAV KVAPRYETNR 

        70         80         90        100        110        120 
AQALYGTARA QVANLVAGVT KGFEKKLEIV GVGYRAALQG KTLQLALGYS HDVSYAIPEG 

       130        140        150        160        170 
ITIAVPKPTE ITIAGNDAQR VGQVAAEIRG YRPPEPYKGK GVKYADEFIF RKEGKKK 

Q1QN15 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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