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UniProtKB/Swiss-Prot entry Q1LT82

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_BAUCH
Primary accession number Q1LT82
Secondary accession numbers None
Integrated into Swiss-Prot on January 15, 2008
Sequence was last modified on May 30, 2006 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 23)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: BCI_0388
From
Baumannia cicadellinicola subsp. Homalodisca coagulata [TaxID: 374463] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Candidatus Baumannia.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1371/journal.pbio.0040188; PubMed=16729848 [NCBI, ExPASy, EBI, Israel, Japan]
Wu D., Daugherty S.C., Van Aken S.E., Pai G.H., Watkins K.L., Khouri H., Tallon L.J., Zaborsky J.M., Dunbar H.E., Tran P.L., Moran N.A., Eisen J.A.;
"Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.";
PLoS Biol. 4:1079-1092(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000238; ABF14027.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_588832.1; -.
3D structure databases
ModBase Q1LT82.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q1LT82.
Genome annotation databases
GeneID 4056458; -.
GenomeReviews CP000238_GR; BCI_0388.
KEGG bci:BCI_0388; -.
Phylogenomic databases
HOGENOM Q1LT82; -.
Genome annotation databases
CMR Q1LT82; BCI_0388.
Other
ProtoNet Q1LT82.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   375  375     D-alanine--D-alanine ligase. PRO_1000030431
DOMAIN   145   348  204     ATP-grasp. 
NP_BIND   175   230  56     ATP (By similarity). 
METAL   302   302        Magnesium or manganese 1 (By similarity). 
METAL   315   315        Magnesium or manganese 1 (By similarity). 
METAL   315   315        Magnesium or manganese 2 (By similarity). 
METAL   317   317        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 375 AA [This is the length of the unprocessed precursor] Molecular weight: 41589 Da [This is the MW of the unprocessed precursor] CRC64: 11B78F1FC8877C53 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MAKLRVGIIF GGQSAEHEVS LQSAKNIVET IDENKFEVVL FGIDKEGQWH INNKLNYLIY 

        70         80         90        100        110        120 
GENETYIALN KSNKHIAIIP GRKHDQFIQI DMLEQLVQLD VIFPIVHGTL GEDGNLQGLL 

       130        140        150        160        170        180 
RMANLPFVGS TVLGSAVSMD KDIAKRLLRD ADLEVTPSIT LTRINRENFS YDQIITYLGS 

       190        200        210        220        230        240 
SLFVKPANQG SSVGVSKVIN RISFDQALAL AFCFDDKVLV ESAINGRELE CAVLGNHDPQ 

       250        260        270        280        290        300 
ASLCGEIVLS DNFYSYEKKY LNEHGAVVVV PAAISKEVSN NIQKIAVRAF QALNCTGMAR 

       310        320        330        340        350        360 
VDVFLTTNNK VLVNEVNTSP GFTSISMYPK LWQASGISYP ALITRLIELA IERYYAEQKK 

       370 
ISHRDIYNKI DTGSA
Q1LT82 in FASTA format

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