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UniProtKB/Swiss-Prot entry Q0VS00

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DDL_ALCBS
Primary accession number Q0VS00
Secondary accession numbers None
Integrated into Swiss-Prot on June 10, 2008
Sequence was last modified on September 5, 2006 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 25)
Name and origin of the protein
Protein name D-alanine--D-alanine ligase
Synonyms EC 6.3.2.4
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Gene name
Name: ddl
OrderedLocusNames: ABO_0600
From
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) [TaxID: 393595] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nbt1232; PubMed=16878126 [NCBI, ExPASy, EBI, Israel, Japan]
Schneiker S., Martins dos Santos V.A.P., Bartels D., Bekel T., Brecht M., Buhrmester J., Chernikova T.N., Denaro R., Ferrer M., Gertler C., Goesmann A., Golyshina O.V., Kaminski F., Khachane A.N., Lang S., Linke B., McHardy A.C., Meyer F., Nechitaylo T., Puehler A., Regenhardt D., Rupp O., Sabirova J.S., Selbitschka W., Yakimov M.M., Timmis K.N., Vorhoelter F.-J., Weidner S., Kaiser O., Golyshin P.N.;
"Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.";
Nat. Biotechnol. 24:997-1004(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AM286690; CAL16048.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_692320.1; -.
3D structure databases
ModBase Q0VS00.
Enzyme and pathway databases
BioCyc ABOR393595:ABO_0600-MON; -.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from HAMAP).
GO:0008716; Molecular function: D-alanine-D-alanine ligase activity (inferred from electronic annotation from HAMAP).
GO:0009252; Biological process: peptidoglycan biosynthetic process (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00047; -; 1.
PBIL [Tree]
InterPro IPR011761; ATP-grasp.
IPR013816; ATP_grasp_subdomain_2.
IPR000291; D-Ala_lig_Van_CS.
IPR005905; D_ala_D_ala.
IPR011095; Dala_Dala_lig_C.
IPR011127; Dala_Dala_lig_N.
IPR013817; Pre-ATP_grasp.
Graphical view of domain structure.
Gene3D G3DSA:3.30.470.20; ATP_grasp_subdomain_2; 1.
G3DSA:3.40.50.20; Pre-ATP_grasp; 1.
Pfam PF07478; Dala_Dala_lig_C; 1.
PF01820; Dala_Dala_lig_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01205; D_ala_D_alaTIGR; 1.
PROSITE PS50975; ATP_GRASP; 1.
PS00843; DALA_DALA_LIGASE_1; 1.
PS00844; DALA_DALA_LIGASE_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q0VS00.
Genome annotation databases
GeneID 4212209; -.
GenomeReviews AM286690_GR; ABO_0600.
KEGG abo:ABO_0600; -.
NMPDR fig|393595.12.peg.598; -.
Phylogenomic databases
HOGENOM Q0VS00; -.
Genome annotation databases
CMR Q0VS00; ABO_0600.
Other
ProtoNet Q0VS00.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell shape; Cell wall biogenesis/degradation; Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese; Metal-binding; Nucleotide-binding; Peptidoglycan synthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   307  307     D-alanine--D-alanine ligase. PRO_0000341048
DOMAIN   110   299  190     ATP-grasp. 
NP_BIND   136   185  50     ATP (By similarity). 
METAL   253   253        Magnesium or manganese 1 (By similarity). 
METAL   266   266        Magnesium or manganese 1 (By similarity). 
METAL   266   266        Magnesium or manganese 2 (By similarity). 
METAL   268   268        Magnesium or manganese 2 (By similarity). 
Sequence information
Length: 307 AA [This is the length of the unprocessed precursor] Molecular weight: 32851 Da [This is the MW of the unprocessed precursor] CRC64: CDB08412E311061A [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MDKRALKERL SRVGRVAVLA GGRSAERAVS LKSGAAVHAG LRNLGLLAEL VDPADKSVDT 

        70         80         90        100        110        120 
LRGFDAAFIA LHGRGGEDGV IQGVLEHLEI PYTGSGVMAS AIGMDKVRTK QLWKGAGLPT 

       130        140        150        160        170        180 
PAFYVAGREE AELGFPVIVK PAHEGSSIGM AKADNTEELG EALVAAEKFD QDVLVEAWVN 

       190        200        210        220        230        240 
GPEYTVAVLG DEALPAIRLQ TPHVFYDFEA KYQSDSTEYL CPAGLDDADE QALRTLALTA 

       250        260        270        280        290        300 
FRVAGCRGWG RVDVMRDEQG QWQLLEVNTV PGMTDHSLVP MAAKATGRDF DVLVGEILLD 


ALERGRG
Q0VS00 in FASTA format

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