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UniProtKB/Swiss-Prot entry Q07889


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name SOS1_HUMAN
Primary accession number Q07889
Secondary accession numbers None
Integrated into Swiss-Prot on July 15, 1999
Sequence was last modified on November 1, 1996 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 93)
Name and origin of the protein
Protein name Son of sevenless homolog 1
Synonym SOS-1
Gene name
Name: SOS1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Brain;
PubMed=8493579 [NCBI, ExPASy, EBI, Israel, Japan]
Chardin P., Camonis J.H., Gale N.W., van Aelst L., Wigler M.H., Bar-Sagi D.;
"Human Sos1: a guanine nucleotide exchange factor for Ras that binds to GRB2.";
Science 260:1338-1343(1993).
[2]
IDENTIFICATION IN A COMPLEX WITH MUC1 AND GRB2, AND INTERACTION WITH MUC1.
PubMed=7664271 [NCBI, ExPASy, EBI, Israel, Japan]
Pandey P., Kharbanda S., Kufe D.;
"Association of the DF3/MUC1 breast cancer antigen with Grb2 and the Sos/Ras exchange protein.";
Cancer Res. 55:4000-4003(1995).
[3]
INTERACTION WITH LAT2.
DOI=10.1084/jem.20021405; PubMed=12486104 [NCBI, ExPASy, EBI, Israel, Japan]
Brdicka T., Imrich M., Angelisova P., Brdickova N., Horvath O., Spicka J., Hilgert I., Luskova P., Draber P., Novak P., Engels N., Wienands J., Simeoni L., Oesterreicher J., Aguado E., Malissen M., Schraven B., Horejsi V.;
"Non-T cell activation linker (NTAL): a transmembrane adaptor protein involved in immunoreceptor signaling.";
J. Exp. Med. 196:1617-1626(2002).
[4]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1082 AND SER-1210, AND MASS SPECTROMETRY.
TISSUE=Epithelium;
DOI=10.1073/pnas.0404720101; PubMed=15302935 [NCBI, ExPASy, EBI, Israel, Japan]
Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P.;
"Large-scale characterization of HeLa cell nuclear phosphoproteins.";
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004).
[5]
STRUCTURE BY NMR OF 422-551.
DOI=10.1074/jbc.272.48.30340; PubMed=9374522 [NCBI, ExPASy, EBI, Israel, Japan]
Zheng J., Chen R.H., Corblan-Garcia S., Cahill S.M., Bar-Sagi D., Cowburn D.;
"The solution structure of the pleckstrin homology domain of human SOS1. A possible structural role for the sequential association of diffuse B cell lymphoma and pleckstrin homology domains.";
J. Biol. Chem. 272:30340-30344(1997).
[6]
X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 198-551.
DOI=10.1016/S0092-8674(00)81756-0; PubMed=9790532 [NCBI, ExPASy, EBI, Israel, Japan]
Soisson S.M., Nimnual A.S., Uy M., Bar-Sagi D., Kuriyan J.;
"Crystal structure of the Dbl and pleckstrin homology domains from the human Son of sevenless protein.";
Cell 95:259-268(1998).
[7]
INVOLVEMENT IN GGF1, AND TISSUE SPECIFICITY.
DOI=10.1086/339689; PubMed=11868160 [NCBI, ExPASy, EBI, Israel, Japan]
Hart T.C., Zhang Y., Gorry M.C., Hart P.S., Cooper M., Marazita M.L., Marks J.M., Cortelli J.R., Pallos D.;
"A mutation in the SOS1 gene causes hereditary gingival fibromatosis type 1.";
Am. J. Hum. Genet. 70:943-954(2002).
[8]
VARIANTS NS4 LYS-266; ARG-269; TYR-309; CYS-337; ARG-434; ARG-548; GLY-552 AND LYS-846, AND VARIANT LEU-655.
DOI=10.1038/ng1926; PubMed=17143285 [NCBI, ExPASy, EBI, Israel, Japan]
Roberts A.E., Araki T., Swanson K.D., Montgomery K.T., Schiripo T.A., Joshi V.A., Li L., Yassin Y., Tamburino A.M., Neel B.G., Kucherlapati R.S.;
"Germline gain-of-function mutations in SOS1 cause Noonan syndrome.";
Nat. Genet. 39:70-74(2007).
[9]
VARIANTS NS4 LYS-108; ARG-269; ARG-432; LYS-433; TYR-441; ARG-548; PRO-550; GLY-552; LYS-552; SER-552; HIS-702; LEU-729; PHE-733 AND LYS-846, VARIANTS LEU-655; ARG-977 AND ARG-1320, AND CHARACTERIZATION OF VARIANTS NS4 GLY-552 AND LEU-729.
DOI=10.1038/ng1939; PubMed=17143282 [NCBI, ExPASy, EBI, Israel, Japan]
Tartaglia M., Pennacchio L.A., Zhao C., Yadav K.K., Fodale V., Sarkozy A., Pandit B., Oishi K., Martinelli S., Schackwitz W., Ustaszewska A., Martin J., Bristow J., Carta C., Lepri F., Neri C., Vasta I., Gibson K., Curry C.J., Lopez Siguero J.P., Digilio M.C., Zampino G., Dallapiccola B., Bar-Sagi D., Gelb B.D.;
"Gain-of-function SOS1 mutations cause a distinctive form of Noonan syndrome.";
Nat. Genet. 39:75-79(2007).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
L13857; AAA35913.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A37488; A37488.
RefSeq NP_005624.2; -.
UniGene Hs.654397
3D structure databases
PDB
1AWE; NMR; -; A=422-551.[ExPASy / RCSB / EBI]
1BKD; X-ray; 2.80 A; S=568-1044.[ExPASy / RCSB / EBI]
1DBH; X-ray; 2.30 A; A=198-551.[ExPASy / RCSB / EBI]
1NVU; X-ray; 2.20 A; S=566-1046.[ExPASy / RCSB / EBI]
1NVV; X-ray; 2.18 A; S=566-1046.[ExPASy / RCSB / EBI]
1NVW; X-ray; 2.70 A; S=566-1046.[ExPASy / RCSB / EBI]
1NVX; X-ray; 3.20 A; S=566-1046.[ExPASy / RCSB / EBI]
1Q9C; X-ray; 3.21 A; A/B/C/D/E/F/G/H/I=1-191.[ExPASy / RCSB / EBI]
1XD2; X-ray; 2.70 A; C=566-1049.[ExPASy / RCSB / EBI]
1XD4; X-ray; 3.64 A; A/B=198-1049.[ExPASy / RCSB / EBI]
1XDV; X-ray; 4.10 A; A/B=198-1044.[ExPASy / RCSB / EBI]
2II0; X-ray; 2.02 A; A=564-1049.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1AWE; -.
1BKD; -.
1DBH; -.
1NVU; -.
1NVV; -.
1NVW; -.
1NVX; -.
1Q9C; -.
1XD2; -.
1XD4; -.
1XDV; -.
2II0; -.
ModBase Q07889.
Protein-protein interaction databases
IntAct Q07889; -.
PTM databases
PhosphoSite Q07889; -.
Enzyme and pathway databases
Reactome REACT_11044; Signaling by Rho GTPases.
REACT_498; Signaling by insulin receptor.
REACT_508; Signal attenuation.
Organism-specific databases
H-InvDB HIX0001994; -.
HGNC HGNC:11187; SOS1.
GenAtlas SOS1.
HPA CAB005396; -.
HPA012613; -.
MIM 135300; phenotype. [NCBI / EBI]
182530; gene. [NCBI / EBI]
610733; phenotype. [NCBI / EBI]
Orphanet 2024; Gingival fibromatosis dominant.
648; Noonan syndrome.
PharmGKB PA36024; -.
GeneCards Q07889.
Gene expression databases
ArrayExpress Q07889; -.
CleanEx HS_SOS1; -.
GermOnline ENSG00000115904; Homo sapiens.
Ontologies
GO
GO:0005829; Cellular component: cytosol (inferred from experiment from Reactome).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0005100; Molecular function: Rho GTPase activator activity (traceable author statement from ProtInc).
GO:0005089; Molecular function: Rho guanyl-nucleotide exchange factor activity (traceable author statement from ProtInc).
GO:0007265; Biological process: Ras protein signal transduction (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR000219; DH-domain.
IPR001331; GDS_CDC24_CS.
IPR009072; Histone-fold.
IPR007125; Histone_core_D.
IPR001849; PH.
IPR011993; PH_type.
IPR008937; Ras_GEF.
IPR000651; RasGef_N.
IPR001895; RasGRF_CDC25.
IPR015759; Sos.
Graphical view of domain structure.
Gene3D G3DSA:1.10.20.10; Histone-fold; 1.
G3DSA:2.30.29.30; PH_type; 1.
G3DSA:1.10.840.10; RasGRF_CDC25; 2.
G3DSA:1.20.900.10; RhoGEF; 1.
PANTHER PTHR23113; Ras_GEF; 1.
PTHR23113:SF47; Sos; 1.
Pfam PF00125; Histone; 1.
PF00169; PH; 1.
PF00617; RasGEF; 1.
PF00618; RasGEF_N; 1.
PF00621; RhoGEF; 1.
Pfam graphical view of domain structure.
SMART SM00233; PH; 1.
SM00147; RasGEF; 1.
SM00229; RasGEFN; 1.
SM00325; RhoGEF; 1.
SMART graphical view of domain structure.
PROSITE PS00741; DH_1; FALSE_NEG.
PS50010; DH_2; 1.
PS50003; PH_DOMAIN; 1.
PS00720; RASGEF; 1.
PS50009; RASGEF_CAT; 1.
PS50212; RASGEF_NTER; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q07889.
Genome annotation databases
Ensembl ENSG00000115904; Homo sapiens. [Contig view]
GeneID 6654; -.
KEGG hsa:6654; -.
Phylogenomic databases
HOGENOM Q07889; -.
HOVERGEN Q07889; -.
Other
LinkHub Q07889; -.
SOURCE SOS1; Homo sapiens.
ProtoNet Q07889.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Disease mutation; Guanine-nucleotide releasing factor; Phosphoprotein; Polymorphism.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom    To Length Description FTId
CHAIN   1   1333  1333     Son of sevenless homolog 1. PRO_0000068894
DOMAIN   200    390  191     DH. 
DOMAIN   444    548  105     PH. 
DOMAIN   597    741  145     N-terminal Ras-GEF. 
DOMAIN   780   1019  240     Ras-GEF. 
COMPBIAS   1258   1261  4     Poly-Pro. 
MOD_RES   1043   1043        Phosphoserine. 
MOD_RES   1078   1078        Phosphoserine (By similarity). 
MOD_RES   1082   1082        Phosphoserine. 
MOD_RES   1210   1210        Phosphoserine. 
VARIANT   108    108  1     E -> K (in NS4). VAR_030423 
VARIANT   266    266  1     T -> K (in NS4). VAR_030424 [3D]
VARIANT   269    269  1     M -> R (in NS4). VAR_030425 [3D]
VARIANT   309    309  1     D -> Y (in NS4). VAR_030426 [3D]
VARIANT   337    337  1     Y -> C (in NS4). VAR_030427 [3D]
VARIANT   432    432  1     W -> R (in NS4). VAR_030428 [3D]
VARIANT   433    433  1     E -> K (in NS4). VAR_030429 [3D]
VARIANT   434    434  1     G -> R (in NS4). VAR_030430 [3D]
VARIANT   441    441  1     C -> Y (in NS4). VAR_030431 
VARIANT   548    548  1     S -> R (in NS4). VAR_030432 
VARIANT   550    550  1     L -> P (in NS4). VAR_030433 
VARIANT   552    552  1     R -> G (in NS4; increases the basal level of active RAS; prolonges RAS activation after EGF stimulation and enhances ERK activation). VAR_030434 
VARIANT   552    552  1     R -> K (in NS4). VAR_030435 
VARIANT   552    552  1     R -> S (in NS4). VAR_030436 
VARIANT   655    655  1     P -> L. VAR_030437 
VARIANT   702    702  1     Y -> H (in NS4). VAR_030438 
VARIANT   729    729  1     W -> L (in NS4; promotes constitutive RAS activation and enhances ERK activation). VAR_030439 
VARIANT   733    733  1     I -> F (in NS4). VAR_030440 
VARIANT   846    846  1     E -> K (in NS4). VAR_030441 
VARIANT   977    977  1     Q -> R. VAR_030442 
VARIANT   1320   1320  1     H -> R. VAR_030443 
TURN   13     15  3      
HELIX   16     19  4      
HELIX   24     34  11      
STRAND   36     39  4      
HELIX   42     60  19      
HELIX   69     76  8      
HELIX   82     94  13      
HELIX   107    118  12      
HELIX   124    152  29      
HELIX   159    167  9      
HELIX   170    175  6      
HELIX   201    224  24      
TURN   225    227  3      
HELIX   228    232  5      
TURN   234    236  3      
HELIX   239    246  8      
HELIX   249    268  20      
STRAND   274    276  3      
HELIX   280    288  9      
TURN   289    292  4      
HELIX   293    302  10      
HELIX   307    316  10      
HELIX   320    327  8      
HELIX   331    337  7      
HELIX   339    342  4      
HELIX   345    363  19      
HELIX   367    379  13      
HELIX   381    392  12      
HELIX   394    402  9      
HELIX   420    426  7      
STRAND   429    431  3      
HELIX   437    439  3      
STRAND   444    452  9      
STRAND   459    473  15      
STRAND   487    496  10      
STRAND   500    503  4      
STRAND   507    509  3      
STRAND   512    516  5      
STRAND   524    527  4      
HELIX   531    545  15      
TURN   546    549  4      
HELIX   552    561  10      
TURN   572    574  3      
HELIX   576    578  3      
TURN   583    585  3      
STRAND   586    588  3      
STRAND   601    604  4      
HELIX   606    613  8      
HELIX   621    630  10      
HELIX   631    633  3      
HELIX   637    648  12      
HELIX   657    664  8      
HELIX   672    680  9      
HELIX   682    699  18      
HELIX   702    706  5      
HELIX   708    720  13      
TURN   724    726  3      
HELIX   727    742  16      
TURN   771    773  3      
TURN   776    778  3      
HELIX   781    797  17      
HELIX   801    803  3      
HELIX   805    810  6      
HELIX   814    817  4      
HELIX   819    840  22      
HELIX   845    864  20      
HELIX   868    878  11      
HELIX   881    884  4      
HELIX   887    891  5