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UniProtKB/Swiss-Prot entry Q06486


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name KC1D_RAT
Primary accession number Q06486
Secondary accession number Q99KK4
Integrated into Swiss-Prot on June 1, 1994
Sequence was last modified on May 10, 2004 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 78)
Name and origin of the protein
Protein name Casein kinase I isoform delta
Synonyms CKI-delta
EC 2.7.11.1
Gene name
Name: Csnk1d
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), AND PROTEIN SEQUENCE OF 1-6.
TISSUE=Testis;
PubMed=8454611 [NCBI, ExPASy, EBI, Israel, Japan]
Graves P.R., Haas D.W., Hagedorn C.H., Depaoli-Roach A.A., Roach P.J.;
"Molecular cloning, expression, and characterization of a 49-kilodalton casein kinase I isoform from rat testis.";
J. Biol. Chem. 268:6394-6401(1993).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Takano A., Nagai K.;
"Casein kinase 1 delta rat.";
Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases.
[3]
AUTOPHOSPHORYLATION, AND AUTOINHIBITORY DOMAIN.
DOI=10.1074/jbc.270.37.21689; PubMed=7665585 [NCBI, ExPASy, EBI, Israel, Japan]
Graves P.R., Roach P.J.;
"Role of COOH-terminal phosphorylation in the regulation of casein kinase I delta.";
J. Biol. Chem. 270:21689-21694(1995).
[4]
TISSUE SPECIFICITY.
DOI=10.1016/S0014-5793(00)02434-0; PubMed=11165242 [NCBI, ExPASy, EBI, Israel, Japan]
Camacho F., Cilio M., Guo Y., Virshup D.M., Patel K., Khorkova O., Styren S., Morse B., Yao Z., Keesler G.A.;
"Human casein kinase Idelta phosphorylation of human circadian clock proteins period 1 and 2.";
FEBS Lett. 489:159-165(2001).
[5]
X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 1-317.
DOI=10.1006/jmbi.1996.0189; PubMed=8648628 [NCBI, ExPASy, EBI, Israel, Japan]
Longenecker K.L., Roach P.J., Hurley T.D.;
"Three-dimensional structure of mammalian casein kinase I: molecular basis for phosphate recognition.";
J. Mol. Biol. 257:618-631(1996).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
L07578; AAA40934.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB063114; BAB60852.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A46002; A46002.
RefSeq NP_620691.2; -.
UniGene Rn.8046
3D structure databases
PDB
1CKI; X-ray; 2.30 A; A/B=1-317.[ExPASy / RCSB / EBI]
1CKJ; X-ray; 2.46 A; A/B=1-317.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1CKI; -.
1CKJ; -.
ModBase Q06486.
PTM databases
PhosphoSite Q06486; -.
Organism-specific databases
RGD 71031; Csnk1d.
Gene expression databases
ArrayExpress Q06486; -.
GermOnline ENSRNOG00000036676; Rattus norvegicus.
Family and domain databases
InterPro IPR000719; Prot_kinase_core.
IPR017441; Protein_kinase_ATP_bd_CS.
IPR017442; Se/Thr_pkinase-rel.
IPR008271; Ser_thr_pkin_AS.
Graphical view of domain structure.
Pfam PF00069; Pkinase; 1.
Pfam graphical view of domain structure.
ProDom PD000001; Prot_kinase; 1.
[Domain structure / List of seq. sharing at least 1 domain]
PROSITE PS00107; PROTEIN_KINASE_ATP; 1.
PS50011; PROTEIN_KINASE_DOM; 1.
PS00108; PROTEIN_KINASE_ST; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q06486.
Genome annotation databases
Ensembl ENSRNOG00000036676; Rattus norvegicus. [Contig view]
GeneID 64462; -.
KEGG rno:64462; -.
Phylogenomic databases
HOVERGEN Q06486; -.
Other
LinkHub Q06486; -.
ProtoNet Q06486.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Alternative splicing; ATP-binding; Cytoplasm; Direct protein sequencing; Kinase; Nucleotide-binding; Phosphoprotein; Serine/threonine-protein kinase; Transferase; Wnt signaling pathway.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   415  415     Casein kinase I isoform delta. PRO_0000192836
DOMAIN   9   277  269     Protein kinase. 
NP_BIND   15    23  9     ATP (By similarity). 
REGION   317   342  26     Autoinhibitory. 
ACT_SITE   128   128        Proton acceptor. 
BINDING   38    38        ATP (By similarity). 
MOD_RES   331   331        Phosphoserine (By similarity). 
MOD_RES   350   350        Phosphoserine (By similarity). 
MOD_RES   382   382        Phosphoserine (By similarity). 
MOD_RES   383   383        Phosphoserine (By similarity). 
VAR_SEQ   400   415        IPGRVASSGLQSVVHR -> RSRDMASLRLHAARQGARCRPQRPRRTTY (in isoform 2). VSP_010255
TURN   6     8  3      
STRAND   9    17  9      
STRAND   19    28  10      
TURN   29    31  3      
STRAND   34    42  9      
HELIX   49    58  10      
STRAND   68    74  7      
STRAND   77    83  7      
HELIX   89    95  7      
TURN   96    98  3      
HELIX   102   121  20      
HELIX   131   133  3      
STRAND   134   136  3      
HELIX   139   141  3      
STRAND   145   147  3      
TURN   159   161  3      
STRAND   177   179  3      
HELIX   182   185  4      
HELIX   192   208  17      
HELIX   225   234  10      
HELIX   237   240  4      
TURN   241   243  3      
HELIX   246   257  12      
HELIX   266   279  14      
HELIX   289   292  4      
HELIX   293   295  3      
Sequence information
Length: 415 AA [This is the length of the unprocessed precursor] Molecular weight: 47316 Da [This is the MW of the unprocessed precursor] CRC64: B97F04AF9EB466D2 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MELRVGNRYR LGRKIGSGSF GDIYLGTDIA AGEEVAIKLE CVKTKHPQLH IESKIYKMMQ 

        70         80         90        100        110        120 
GGVGIPTIRW CGAEGDYNVM VMELLGPSLE DLFNFCSRKF SLKTVLLLAD QMISRIEYIH 

       130        140        150        160        170        180 
SKNFIHRDVK PDNFLMGLGK KGNLVYIIDF GLAKKYRDAR THQHIPYREN KNLTGTARYA 

       190        200        210        220        230        240 
SINTHLGIEQ SRRDDLESLG YVLMYFNLGS LPWQGLKAAT KRQKYERISE KKMSTPIEVL 

       250        260        270        280        290        300 
CKGYPSEFAT YLNFCRSLRF DDKPDYSYLR QLFRNLFHRQ GFSYDYVFDW NMLKFGASRA 

       310        320        330        340        350        360 
ADDAERERRD REERLRHSRN PATRGLPSTA SGRLRGTQEV APPTPLTPTS HTANTSPRPV 

       370        380        390        400        410 
SGMERERKVS MRLHRGAPVN VSSSDLTGRQ DTSRMSTSQI PGRVASSGLQ SVVHR 

Q06486 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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