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[1]
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NUCLEOTIDE SEQUENCE [GENOMIC RNA] (ISOFORM GENOME POLYPROTEIN).
PubMed=1431807 [NCBI, ExPASy, EBI, Israel, Japan]
Nicolas O.,
Laliberte J.F.;
"The complete nucleotide sequence of turnip mosaic potyvirus RNA.";
J. Gen. Virol. 73:2785-2793(1992).
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[2]
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NUCLEOTIDE SEQUENCE [GENOMIC RNA] OF 1534-3163 (ISOFORM GENOME POLYPROTEIN), AND PARTIAL PROTEIN SEQUENCE.
PubMed=2254757 [NCBI, ExPASy, EBI, Israel, Japan]
Tremblay M.F.,
Nicolas O.,
Sinha R.,
Lazure C.,
Laliberte J.F.;
"Sequence of the 3'-terminal region of turnip mosaic virus RNA and the capsid protein gene.";
J. Gen. Virol. 71:2769-2772(1990).
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[3]
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RIBOSOMAL FRAMESHIFT (ISOFORM PIPO).
DOI=10.1073/pnas.0800468105; PubMed=18408156 [NCBI, ExPASy, EBI, Israel, Japan]
Chung B.Y.-W.,
Miller W.A.,
Atkins J.F.,
Firth A.E.;
"An overlapping essential gene in the Potyviridae.";
Proc. Natl. Acad. Sci. U.S.A. 105:5897-5902(2008).
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[4]
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REVIEW.
DOI=10.1016/S0168-1702(01)00220-9; PubMed=11226583 [NCBI, ExPASy, EBI, Israel, Japan]
Urcuqui-Inchima S.,
Haenni A.L.,
Bernardi F.;
"Potyvirus proteins: a wealth of functions.";
Virus Res. 74:157-175(2001).
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- FUNCTION: Coat protein is involved in aphid transmission, cell-to-cell and systemis movement, encapsidation of the viral RNA and in the regulation of viral RNA amplification.
- FUNCTION: Nuclear inclusion protein B is a RNA-dependent RNA polymerase that plays an essential role in the virus replication.
- FUNCTION: Helper component proteinase is required for aphid transmission and also has proteolytic activity. Interacts with virions and aphid stylets. Acts as a suppressor of RNA-mediated gene silencing, also known as post-transcriptional gene silencing (PTGS), a mechanism of plant viral defense that limits the accumulation of viral RNAs. May have RNA-binding activity (By similarity).
- FUNCTION: Cytoplasmic inclusion protein has helicase activity. It may be involved in replication (By similarity).
- FUNCTION: Both 6K peptides are indispensable for virus replication (By similarity).
- FUNCTION: Nuclear inclusion protein A has RNA-binding and proteolytic activities.
- CATALYTIC ACTIVITY: Hydrolyzes glutaminyl bonds, and activity is further restricted by preferences for the amino acids in P6 - P1' that vary with the species of potyvirus, e.g. Glu-Xaa-Xaa-Tyr-Xaa-Gln-|-(Ser or Gly) for the enzyme from tobacco etch virus. The natural substrate is the viral polyprotein, but other proteins and oligopeptides containing the appropriate consensus sequence are also cleaved.
- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).
- CATALYTIC ACTIVITY: Hydrolyzes a Gly-|-Gly bond at its own C-terminus, commonly in the sequence -Tyr-Xaa-Val-Gly-|-Gly, in the processing of the potyviral polyprotein.
- SUBCELLULAR LOCATION: Coat protein: Virion (Potential).
- ALTERNATIVE PRODUCTS:
2 named isoforms [FASTA] produced by ribosomal frameshifting. Knockout of PIPO ORF is lethal for the virus. Because of a common N-terminus, some results depicted for the genome polyprotein might belong to the PIPO isoform.
| Name | Genome polyprotein |
| Isoform ID | Q02597-1 |
| Note: Produced by conventional translation. |
| This is the isoform sequence displayed in this entry. |
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| Name | PIPO |
| Synonyms | Pretty interesting potyviridae ORF |
| Isoform ID | Q02597-2 |
| Note: Produced by ribosomal frameshifting. |
| Features which should be applied to build the isoform sequence: VSP_034776, VSP_034777. |
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- DOMAIN: The N-terminus of helper component proteinase is involved in interaction with stylets. The central part is involved in interaction with virions and the C-terminus is involved in cell-to cell movement of the virus.
- PTM: VPg is covalently linked to the genomic RNA (By similarity).
- PTM: The viral RNA of potyviruses is expressed as a single polyprotein which undergoes post-translational proteolytic processing by the main proteinase NIa-pro resulting in the production of at least ten individual proteins. The P1 proteinase and the HC-pro cleave only their respective C-termini autocatalytically. 6K1 is essential for proper proteolytic separation of P3 from CI (By similarity).
- SIMILARITY: Belongs to the potyviruses polyprotein family.
- SIMILARITY: Contains 1 helicase ATP-binding domain.
- SIMILARITY: Contains 1 helicase C-terminal domain.
- SIMILARITY: Contains 1 peptidase C4 domain [view classification].
- SIMILARITY: Contains 1 peptidase C6 domain [view classification].
- SIMILARITY: Contains 1 peptidase S30 domain [view classification].
- SIMILARITY: Contains 1 RdRp catalytic domain.
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Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms.
Distributed under the Creative Commons Attribution-NoDerivs License.
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| Length: 3163 AA [This is the length of the unprocessed precursor] |
Molecular weight: 357822 Da [This is the MW of the unprocessed precursor] |
CRC64: 61B0F73B58DF6D59 [This is a checksum on the sequence] |
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10 20 30 40 50 60
MAAVTFASAI TNAITNKTTS TGMVQFGSFP PMPLRSTTVT TVATPVGQPK LYTVRFGSLD
70 80 90 100 110 120
PVIVKGGAGS LAKATRQQPS VEIDVSLSEA AALEVAKPKS SAVLRMHEEA NKERALFLDW
130 140 150 160 170 180
EASLKRRSYG IAENEKVVMT TRGVSKIVPR SSRAMKQKRA RERRRAQQPI ILKWEPKLSG
190 200 210 220 230 240
FSIGGGFSAS AIEAEEVRTK WPLHKTPSMK KRMVHKTCKM SDQGVDMLIR SLVKIFKAKS
250 260 270 280 290 300
ANIEYIGKKP IKVDFIRKER TKFARIQVAH LLGKRAQRDL LAGMEENHFI DILSEYSGNG
310 320 330 340 350 360
TTINPGVVCA GWSGIVVRNE TLTQKRSRSP SKAFVIRGEH EDKLYDARIK ITKTMSLKIV
370 380 390 400 410 420
HFSARGANFW KGFDRCFLAY RSDNREHTCY SGLDVTECGE VAALMCLAMF PCGKITCPDC
430 440 450 460 470 480
VIDSELSQGQ ASGPSMKHRL TQLRDVIKSS YPRFKHAVQI LDRYEQSLSS ANENYQDFAE
490 500 510 520 530 540
IQSISDGVEK AAFPHVNKLN AILIKGATAT GEEFSQATKH LLEIARYLKN RTENIEKGSL
550 560 570 580 590 600
KSFRNKVSQK AHINPTLMCD NQLDKNGNFI WGERGYHAKR FFSNYFEIID PKKGYTQYET
610 620 630 640 650 660
RVVPNGSRKL AIGKLIVPTN FEVLREQMRG EPVEPYPVTV ECVSKSQGDF VHACCCVTTE
670 680 690 700 710 720
SGDPVLSEIK MPTKHHLVIG NSGDPKYIDL PEIEENKMYI AKEGYCYINI FLAMLVNVKE
730 740 750 760 770 780
SQAKEFTKVV RDKLVSELGK WPTLLDVATA CYFLKVFYPD VANAELPRML VDHKTKIIHV
790 800 810 820 830 840
VDSYGSLSTG YHVLKTNTVE QLIKFTRCNL ESSLKHYRVG GTEWENAHGA DNIDNPQWCI
850 860 870 880 890 900
KRLVKGVYRP KQLKEDMLAN PFLPLYALLS PGVILAFYNS GSLEHLMNHY ISADSNVAVL
910 920 930 940 950 960
LVVLKSLAKK VSTSQSVLAQ LQIIERSLPE LIEAKANING PDDAATRACN RFMGMLLHMA
970 980 990 1000 1010 1020
EPNYELANGG YTFLRDHSIS ILEKSYLQIL DEAWNELSWS ERCVIRYYPS KQAIFTQKDL
1030 1040 1050 1060 1070 1080
PMQSEADLGG RYSESVISSY EWSKQQAKGV KDSVVNKLRS SMSWTSSKVS NSVCRTINYL
1090 1100 1110 1120 1130 1140
VPDVFKFMNV LVCISLLIKM TAEANHIITT QRRLKLDIEE TERKKIEWEL AFHHNILTHS
1150 1160 1170 1180 1190 1200
ASQHPTLDEF TAYIAEKAPH LSEHIEPEEK EVVHQAKRQS EQELERVIAF VALVLMMFDA
1210 1220 1230 1240 1250 1260
ERSDCVTKIL NKLKGLVATV EPTVYHQTLN EIEDDLNERN LFVDFELSSD SEMLQQLPAE
1270 1280 1290 1300 1310 1320
KTFASWWSHQ LSRGFTIPHY RTEGKFMTFT RATATEVAGK IAHESDKDIL LMGAVGSGKS
1330 1340 1350 1360 1370 1380
TGLPYHLSRK GNVLLLEPTR PLAENVHKQL SQAPFHQNTT LRMRGLTAFG SAPISVMTSG
1390 1400 1410 1420 1430 1440
FALNYFANNR SRIEEFDFVI FDECHVHDAN AMAMRCLIHE CDYSGKIIKV SATPPGREVE
1450 1460 1470 1480 1490 1500
FSTQYPVSIS TEDTLSFQDF VNAQGSGSNC DVISKGDNIL VYVASYNEVD TLSKLLIERD
1510 1520 1530 1540 1550 1560
FKVTKVDGRT MKVGNIEITT SGTPSRKHFI VATNIIENGV TLDIDVVADF GTKVLPYLDT
1570 1580 1590 1600 1610 1620
DNRMLSTTKT SINYGERIQR LGRVGRHKPG HALRIGHTER GLSEVPSCIA TEAALKCFTY
1630 1640 1650 1660 1670 1680
GLPVITNNVS TSILGNVTVK QARTMSVFEI TPFYTSQVVR YDGSMHPQVH ALLKRFKLRD
1690 1700 1710 1720 1730 1740
SEIVLTKLAI PNRGVNAGSQ PVSMHDSVQM LKIGVTLRIP FMCRDIPEKL HLDMWDVVVK
1750 1760 1770 1780 1790 1800
FKGDAGFGRL SSSASKVAYT LQTDVNSIQR TVTIIDTLIA EERRKQEYFK TVTSNCVSSS
1810 1820 1830 1840 1850 1860
NFSLQSITNA IKSRMMKDHP CENISVLEGA KSQLLEFRNL NSDHSFVTKT DGISRSFMRD
1870 1880 1890 1900 1910 1920
YGALEAVNHQ STNEMSKFLQ LKGKWNKTLI TRDVLVICGV LGGGVWMVVQ HFRSKVSEPV
1930 1940 1950 1960 1970 1980
THEAKGKKQR QKLKFRNARD NKMGREVYGD DDTIEHFFGD AYTKKGKSKG RTRGIGHKNR
1990 2000 2010 2020 2030 2040
KFINMYGFDP EDFSAVRFVD PLTGATLDDN PFTDITLVQK HFGDIRMDLL GEDELDSNEI
2050 2060 2070 2080 2090 2100
RMNKTIQAYY MNNKTGKALK VDLTPHIPLK VCDLHATIAG FPERENELRQ TGKAQPINID
2110 2120 2130 2140 2150 2160
EVPRANNELV PVDHESNSMF RGLRDYNPIS NNICHLTNVS DGASNSLYGV GFGPLILTNR
2170 2180 2190 2200 2210 2220
HLFERNNGEL IIKSRHGEFV IKNTTQLHLL PIPDRDLLLI RLPKDVPPFP QKLGFRQPEK
2230 2240 2250 2260 2270 2280
GERICMVGSN FQTKSITSIV SETSTIMPVE NSQFWKHWIS TKDGQCGSPM VSTKDGKILG
2290 2300 2310 2320 2330 2340
LHSLANFQNS INYFAAFPDD FTEKYLHTIE AHEWVKHWKY NTSAISWGSL NIQASQPVSL
2350 2360 2370 2380 2390 2400
FKVSKLISDL DSTAVYAQTQ QNRWMFEQLT GNLKAIAHCP SQLVTKHTVK GKCQMFDLYL
2410 2420 2430 2440 2450 2460
KLHDEAREYF QPMLGQYQKS KLNREAYAKD LLKYATPIEA GNIDCDLFEK TVEIVISDLR
2470 2480 2490 2500 2510 2520
GYGFETCNYV TDENDIFEAL NMKSAVGALY KGKKKDYFAE FTPEVKEEIL KQSCERLFLG
2530 2540 2550 2560 2570 2580
KMGVWNGSLK AELRPLEKVE ANKTRTFTAA PLDTLLGGKV CVDDFNNQFY DHNLRAPWDV
2590 2600 2610 2620 2630 2640
GMTKFYCGWD RLLESLPDGW VYCDADGSQF DSSLSPYLIN AVLNIRLGFM EEWDVGEVML
2650 2660 2670 2680 2690 2700
RNLYTEIVYT PISTPDGTLV KKFKGNNSGQ PSTVVDNTLM VILAVNYSLK KGGIPSELRD
2710 2720 2730 2740 2750 2760
SIIRFFVNGD DLLLSVHPEY EYILDTMADN FRELGLKYTF DSRTREKGDL WFMSHQGHRR
2770 2780 2790 2800 2810 2820
EGIWIPKLEP ERIVSILEWD RSKEPCHRLE AICAAMIESW GYDKLTHEIR KFYAWMIEQA
2830 2840 2850 2860 2870 2880
PFSSLAQEGK APYIAETALR KLYLDKEPAQ EDLTQYLQAI FEDYEDGVEA CVYHQAGETL
2890 2900 2910 2920 2930 2940
DADLTEEQKQ AEKEKKEREK AEKERERQKQ LAFKKGKDVA QEEGKRDKEV NAGTSGTFSV
2950 2960 2970 2980 2990 3000
PRLKSLTSKM RVPRYEKRVA LNLDHLILYT PEQTDLSNTR STRKQFDTWF EGVMADYELT
3010 3020 3030 3040 3050 3060
EDKMQIILNG LRVWCIENGT SPNINGMWVM MDGDDQVEFP IKPLIDHAKP TFRQIMAHFS
3070 3080 3090 3100 3110 3120
DVAEAYIEKR NQDRPYMPRY GLQRNLTDMS LARYAFDFYE MTSRTPIRAR EAHIQMKAAA
3130 3140 3150 3160
LRGANNNLFG LDGNVGTTVE NTERHTTEDV NRNMHNLLGV QGL
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Q02597 in FASTA format |
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