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UniProtKB/Swiss-Prot entry Q8S9M1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PAP13_ARATH
Primary accession number Q8S9M1
Secondary accession numbers O48521 Q84X37 Q84X38 Q84X39 Q8GY49
Integrated into Swiss-Prot on May 15, 2007
Sequence was last modified on May 15, 2007 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 21)
Name and origin of the protein
Protein name Probable plastid-lipid-associated protein 13, chloroplastic [Precursor]
Synonyms Fibrillin-13
AtPGL30
Gene name
Name: PAP13
OrderedLocusNames: At2g42130
ORFNames: T24P15.4
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/45471; PubMed=10617197 [NCBI, ExPASy, EBI, Israel, Japan]
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 3; 4 AND 5).
STRAIN=cv. Columbia;
DOI=10.1104/pp.010207; PubMed=12481096 [NCBI, ExPASy, EBI, Israel, Japan]
Xiao Y.-L., Malik M., Whitelaw C.A., Town C.D.;
"Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.";
Plant Physiol. 130:2118-2128(2002).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6).
STRAIN=cv. Columbia;
DOI=10.1126/science.1071006; PubMed=11910074 [NCBI, ExPASy, EBI, Israel, Japan]
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T., Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K., Shinagawa A., Shinozaki K.;
"Functional annotation of a full-length Arabidopsis cDNA collection.";
Science 296:141-145(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 3; 4 AND 5).
STRAIN=cv. Columbia;
DOI=10.1104/pp.105.063479; PubMed=16244158 [NCBI, ExPASy, EBI, Israel, Japan]
Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L., Ayele M., Haas B.J., Wu H.C., Town C.D.;
"Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.";
Plant Physiol. 139:1323-1337(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
STRAIN=cv. Columbia;
Underwood B.A., Xiao Y.-L., Moskal W.A. Jr., Monaghan E.L., Wang W., Redman J.C., Wu H.C., Utterback T., Town C.D.;
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
[7]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
DOI=10.1074/jbc.M511939200; PubMed=16414959 [NCBI, ExPASy, EBI, Israel, Japan]
Vidi P.-A., Kanwischer M., Baginsky S., Austin J.R., Csucs G., Doermann P., Kessler F., Brehelin C.;
"Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.";
J. Biol. Chem. 281:11225-11234(2006).
[8]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
DOI=10.1104/pp.105.076083; PubMed=16461379 [NCBI, ExPASy, EBI, Israel, Japan]
Ytterberg A.J., Peltier J.-B., van Wijk K.J.;
"Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.";
Plant Physiol. 140:984-997(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC002561; AAB88638.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY074656; AAL69472.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY219066; AAO37153.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY954828; AAX55154.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY219067; AAO37154.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY219068; AAO37155.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK117864; BAC42505.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T00923; T00923.
RefSeq NP_973667.2; -.
UniGene At.37008
3D structure databases
ModBase Q8S9M1.
Organism-specific databases
GeneFarm 2866; 270.
TAIR At2g42130; -.
Ontologies
GO
GO:0010287; Cellular component: plastoglobule (inferred from direct assay from TAIR).
QuickGo view.
Family and domain databases
BLOCKS Q8S9M1.
Genome annotation databases
GeneID 818813; -.
GenomeReviews CT485783_GR; AT2G42130.
NMPDR fig|3702.1.peg.11358; -.
Other
ProtoNet Q8S9M1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Chloroplast; Complete proteome; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    48  48     Chloroplast (Potential). 
CHAIN   49   299  251     Probable plastid-lipid-associated protein 13, chloroplastic. PRO_0000286536
VAR_SEQ   1   158        Missing (in isoform 6). VSP_025073
VAR_SEQ   1    49        Missing (in isoform 3, isoform 4 and isoform 5). VSP_025074
VAR_SEQ   78    78        A -> AEQSSVCLELSNYFCPEAIYVQ (in isoform 4). VSP_025075
VAR_SEQ   148   155        RFPSTLAN -> SVLIIFSS (in isoform 5). VSP_025076
VAR_SEQ   156   299        Missing (in isoform 5). VSP_025077
VAR_SEQ   253   270        GSFERFFMISYLDEEILI -> KLLYPFFIHLTIFRSNLH (in isoform 2). VSP_025078
VAR_SEQ   271   299        Missing (in isoform 2). VSP_025079
Sequence information
Length: 299 AA [This is the length of the unprocessed precursor] Molecular weight: 32986 Da [This is the MW of the unprocessed precursor] CRC64: E73AC3466B2F1A3D [This is a checksum on the sequence]
        10         20         30         40         50         60 
MALIHGSVPG TSAVRLVFST SASPSRFCLN VPVVKQGWKN SCRRRVLRAM VQETVQGSPL 

        70         80         90        100        110        120 
VYAREMERLS AKESLLLALK DAGGFEALVT GKTTNMQRID VNERITSLER LNPTPRPTTS 

       130        140        150        160        170        180 
PCFEGRWNFE WFGSGSPGLL AARVIFERFP STLANLSRME ILIKDANAKA TANIKLLNSI 

       190        200        210        220        230        240 
ESKIILSSKL TVEGPLRLKE EYVEGMLETP TVIEEAVPEQ LKSALGQAAT TLQQLPALIK 

       250        260        270        280        290 
DTLASGLRIP LSGSFERFFM ISYLDEEILI VRDTEGVPEV LTRIETPSST VVETIEYDS 

Q8S9M1 in FASTA format

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