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UniProtKB/Swiss-Prot entry P32340


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NDI1_YEAST
Primary accession number P32340
Secondary accession numbers None
Integrated into Swiss-Prot on October 1, 1993
Sequence was last modified on October 1, 1993 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 87)
Name and origin of the protein
Protein name Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial [Precursor]
Synonyms EC 1.6.5.3
Internal NADH dehydrogenase
Gene name
Name: NDI1
OrderedLocusNames: YML120C
ORFNames: YM7056.06C
From
Saccharomyces cerevisiae (Baker's yeast) [TaxID: 4932] 
Taxonomy Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PROTEIN SEQUENCE OF 27-36 AND 41-50.
STRAIN=YP102;
PubMed=1735444 [NCBI, ExPASy, EBI, Israel, Japan]
de Vries S., van Witzenburg R., Grivell L.A., Marres C.A.M.;
"Primary structure and import pathway of the rotenone-insensitive NADH-ubiquinone oxidoreductase of mitochondria from Saccharomyces cerevisiae.";
Eur. J. Biochem. 203:587-592(1992).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204511 / S288c / AB972;
PubMed=9169872 [NCBI, ExPASy, EBI, Israel, Japan]
Bowman S., Churcher C.M., Badcock K., Brown D., Chillingworth T., Connor R., Dedman K., Devlin K., Gentles S., Hamlin N., Hunt S., Jagels K., Lye G., Moule S., Odell C., Pearson D., Rajandream M.A., Rice P., Skelton J., Walsh S.V., Whitehead S., Barrell B.G.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII.";
Nature 387:90-93(1997).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
DOI=10.1101/gr.6037607; PubMed=17322287 [NCBI, ExPASy, EBI, Israel, Japan]
Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F., Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A., Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F., Williamson J., Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G., Kolodner R.D., LaBaer J.;
"Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.";
Genome Res. 17:536-543(2007).
[4]
SUBCELLULAR LOCATION.
DOI=10.1021/bi010277r; PubMed=11502169 [NCBI, ExPASy, EBI, Israel, Japan]
Grandier-Vazeille X., Bathany K., Chaignepain S., Camougrand N., Manon S., Schmitter J.-M.;
"Yeast mitochondrial dehydrogenases are associated in a supramolecular complex.";
Biochemistry 40:9758-9769(2001).
[5]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
DOI=10.1038/nature02046; PubMed=14562106 [NCBI, ExPASy, EBI, Israel, Japan]
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-27 AND THR-28, AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M700098-MCP200; PubMed=17761666 [NCBI, ExPASy, EBI, Israel, Japan]
Reinders J., Wagner K., Zahedi R.P., Stojanovski D., Eyrich B., van der Laan M., Rehling P., Sickmann A., Pfanner N., Meisinger C.;
"Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase.";
Mol. Cell. Proteomics 6:1896-1906(2007).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X61590; CAA43787.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z49218; CAA89160.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY723851; AAU09768.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S26704; S26704.
RefSeq NP_013586.1; -.
3D structure databases
ModBase P32340.
Protein-protein interaction databases
DIP DIP:5554N; -.
IntAct P32340; -.
Organism-specific databases
CYGD YML120c; -.
SGD S000004589; NDI1.
Yeast-GFP YML120C.
Gene expression databases
ArrayExpress P32340; -.
GermOnline YML120C; Saccharomyces cerevisiae.
Ontologies
GO
GO:0005743; Cellular component: mitochondrial inner membrane (inferred from electronic annotation from UniProtKB-KW).
GO:0005759; Cellular component: mitochondrial matrix (inferred from direct assay from SGD).
GO:0050660; Molecular function: FAD binding (inferred from electronic annotation from InterPro).
GO:0008137; Molecular function: NADH dehydrogenase (ubiquinone) activity (inferred from electronic annotation from EC).
GO:0001300; Biological process: chronological cell aging (inferred from mutant phenotype from SGD).
GO:0006120; Biological process: mitochondrial electron transport, NADH to ubiquinone (inferred from direct assay from SGD).
GO:0006116; Biological process: NADH oxidation (inferred from direct assay from SGD).
GO:0043065; Biological process: positive regulation of apoptosis (inferred from mutant phenotype from SGD).
QuickGo view.
Family and domain databases
InterPro IPR013027; FAD_pyr_nucl-diS_OxRdtase.
IPR001327; Pyr_OxRdtase_NAD_bd.
Graphical view of domain structure.
Pfam PF00070; Pyr_redox; 1.
PF07992; Pyr_redox_2; 1.
Pfam graphical view of domain structure.
PRINTS PR00368; FADPNR.
BLOCKS P32340.
ProtoNet P32340.
Proteomic databases
PeptideAtlas P32340; -.
Genome annotation databases
Ensembl YML120C; Saccharomyces cerevisiae. [Contig view]
GeneID 854919; -.
GenomeReviews Z71257_GR; YML120C.
KEGG sce:YML120C; -.
NMPDR fig|4932.3.peg.4622; -.
Phylogenomic databases
HOGENOM P32340; -.
Other
LinkHub P32340; -.
NextBio 977929; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Direct protein sequencing; FAD; Flavoprotein; Membrane; Mitochondrion; Mitochondrion inner membrane; NAD; Oxidoreductase; Phosphoprotein; Transit peptide; Ubiquinone.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    26  26     Mitochondrion. 
CHAIN   27   513  487     Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial. PRO_0000021793
NP_BIND   55    85  31     FAD (By similarity). 
NP_BIND   229   265  37     NAD (By similarity). 
MOD_RES   27    27        Phosphoserine. 
MOD_RES   28    28        Phosphothreonine. 
VARIANT   10    10  1     K -> R. 
Sequence information
Length: 513 AA [This is the length of the unprocessed precursor] Molecular weight: 57250 Da [This is the MW of the unprocessed precursor] CRC64: E3A43D75A1ADCF3B [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLSKNLYSNK RLLTSTNTLV RFASTRSTGV ENSGAGPTSF KTMKVIDPQH SDKPNVLILG 

        70         80         90        100        110        120 
SGWGAISFLK HIDTKKYNVS IISPRSYFLF TPLLPSAPVG TVDEKSIIEP IVNFALKKKG 

       130        140        150        160        170        180 
NVTYYEAEAT SINPDRNTVT IKSLSAVSQL YQPENHLGLH QAEPAEIKYD YLISAVGAEP 

       190        200        210        220        230        240 
NTFGIPGVTD YGHFLKEIPN SLEIRRTFAA NLEKANLLPK GDPERRRLLS IVVVGGGPTG 

       250        260        270        280        290        300 
VEAAGELQDY VHQDLRKFLP ALAEEVQIHL VEALPIVLNM FEKKLSSYAQ SHLENTSIKV 

       310        320        330        340        350        360 
HLRTAVAKVE EKQLLAKTKH EDGKITEETI PYGTLIWATG NKARPVITDL FKKIPEQNSS 

       370        380        390        400        410        420 
KRGLAVNDFL QVKGSNNIFA IGDNAFAGLP PTAQVAHQEA EYLAKNFDKM AQIPNFQKNL 

       430        440        450        460        470        480 
SSRKDKIDLL FEENNFKPFK YNDLGALAYL GSERAIATIR SGKRTFYTGG GLMTFYLWRI 

       490        500        510 
LYLSMILSAR SRLKVFFDWI KLAFFKRDFF KGL 

P32340 in FASTA format

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