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UniProtKB/Swiss-Prot entry P31016


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DLG4_RAT
Primary accession number P31016
Secondary accession number P97631
Integrated into Swiss-Prot on July 1, 1993
Sequence was last modified on July 1, 1993 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 106)
Name and origin of the protein
Protein name Disks large homolog 4
Synonyms Postsynaptic density protein 95
PSD-95
Synapse-associated protein 90
SAP90
Gene name
Name: Dlg4
Synonyms: Dlgh4, Psd95
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=Sprague-Dawley;
TISSUE=Brain;
DOI=10.1016/0896-6273(92)90245-9; PubMed=1419001 [NCBI, ExPASy, EBI, Israel, Japan]
Cho K.-O., Hunt C.A., Kennedy M.B.;
"The rat brain postsynaptic density fraction contains a homolog of the Drosophila discs-large tumor suppressor protein.";
Neuron 9:929-942(1992).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=Sprague-Dawley;
TISSUE=Brain;
PubMed=7680343 [NCBI, ExPASy, EBI, Israel, Japan]
Kistner U., Wenzel B.M., Veh R.W., Cases-Langhoff C., Garner A.M., Appeltauer U., Voss B., Gundelfinger E.D., Garner C.C.;
"SAP90, a rat presynaptic protein related to the product of the Drosophila tumor suppressor gene dlg-A.";
J. Biol. Chem. 268:4580-4583(1993).
[3]
PROTEIN SEQUENCE OF 113-126; 212-233; 300-312; 381-399 AND 598-617, AND MASS SPECTROMETRY.
STRAIN=Sprague-Dawley;
TISSUE=Hippocampus;
Lubec G., Diao W.;
Submitted (APR-2007) to UniProtKB.
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 566-625.
STRAIN=Wistar Kyoto;
TISSUE=Vascular smooth muscle;
Adams L.D., Werny I., Schwartz S.M.;
Submitted (NOV-1996) to the EMBL/GenBank/DDBJ databases.
[5]
INTERACTION WITH GRIN2A; GRIN2B; GRIN2C AND GRIN2D.
PubMed=7569905 [NCBI, ExPASy, EBI, Israel, Japan]
Kornau H.C., Schenker L.T., Kennedy M.B., Seeburg P.H.;
"Domain interaction between NMDA receptor subunits and the postsynaptic density protein PSD-95.";
Science 269:1737-1740(1995).
[6]
SUBCELLULAR LOCATION.
PubMed=8922396 [NCBI, ExPASy, EBI, Israel, Japan]
Brenman J.E., Christopherson K.S., Craven S.E., McGee A.W., Bredt D.S.;
"Cloning and characterization of postsynaptic density 93, a nitric oxide synthase interacting protein.";
J. Neurosci. 16:7407-7415(1996).
[7]
INTERACTION WITH DLGAP1; DLGAP2; DLGAP3 AND DLGAP4, AND SUBCELLULAR LOCATION.
TISSUE=Brain;
DOI=10.1074/jbc.272.18.11943; PubMed=9115257 [NCBI, ExPASy, EBI, Israel, Japan]
Takeuchi M., Hata Y., Hirao K., Toyoda A., Irie M., Takai Y.;
"SAPAPs. A family of PSD-95/SAP90-associated proteins localized at postsynaptic density.";
J. Biol. Chem. 272:11943-11951(1997).
[8]
INTERACTION WITH BEGAIN AND DLGAP1.
DOI=10.1074/jbc.273.41.26269; PubMed=9756850 [NCBI, ExPASy, EBI, Israel, Japan]
Deguchi M., Hata Y., Takeuchi M., Ide N., Hirao K., Yao I., Irie M., Toyoda A., Takai Y.;
"BEGAIN (brain-enriched guanylate kinase-associated protein), a novel neuronal PSD-95/SAP90-binding protein.";
J. Biol. Chem. 273:26269-26272(1998).
[9]
INTERACTION WITH MAP1A.
PubMed=9786987 [NCBI, ExPASy, EBI, Israel, Japan]
Brenman J.E., Topinka J.R., Cooper E.C., McGee A.W., Rosen J., Milroy T., Ralston H.J., Bredt D.S.;
"Localization of postsynaptic density-93 to dendritic microtubules and interaction with microtubule-associated protein 1A.";
J. Neurosci. 18:8805-8813(1998).
[10]
INTERACTION WITH SYNGAP1.
DOI=10.1016/S0896-6273(00)81008-9; PubMed=9581761 [NCBI, ExPASy, EBI, Israel, Japan]
Kim J.H., Liao D., Lau L.-F., Huganir R.L.;
"SynGAP: a synaptic RasGAP that associates with the PSD-95/SAP90 protein family.";
Neuron 20:683-691(1998).
[11]
INTERACTION WITH CRIPT.
DOI=10.1016/S0896-6273(00)81009-0; PubMed=9581762 [NCBI, ExPASy, EBI, Israel, Japan]
Niethammer M., Valtschanoff J.G., Kapoor T.M., Allison D.W., Weinberg R.J., Craig A.M., Sheng M.;
"CRIPT, a novel postsynaptic protein that binds to the third PDZ domain of PSD-95/SAP90.";
Neuron 20:693-707(1998).
[12]
MUTAGENESIS OF CYS-3 AND CYS-5, AND PALMITOYLATION AT CYS-3 AND CYS-5.
DOI=10.1083/jcb.148.1.159; PubMed=10629226 [NCBI, ExPASy, EBI, Israel, Japan]
El-Husseini A.E., Craven S.E., Chetkovich D.M., Firestein B.L., Schnell E., Aoki C., Bredt D.S.;
"Dual palmitoylation of PSD-95 mediates its vesiculotubular sorting, postsynaptic targeting, and ion channel clustering.";
J. Cell Biol. 148:159-172(2000).
[13]
INTERACTION WITH KCND2.
DOI=10.1074/jbc.M109412200; PubMed=11923279 [NCBI, ExPASy, EBI, Israel, Japan]
Wong W., Newell E.W., Jugloff D.G.M., Jones O.T., Schlichter L.C.;
"Cell surface targeting and clustering interactions between heterologously expressed PSD-95 and the Shal voltage-gated potassium channel, Kv4.2.";
J. Biol. Chem. 277:20423-20430(2002).
[14]
ALTERNATIVE SPLICING, AND TISSUE SPECIFICITY.
PubMed=12151521 [NCBI, ExPASy, EBI, Israel, Japan]
Chetkovich D.M., Bunn R.C., Kuo S.-H., Kawasaki Y., Kohwi M., Bredt D.S.;
"Postsynaptic targeting of alternative postsynaptic density-95 isoforms by distinct mechanisms.";
J. Neurosci. 22:6415-6425(2002).
[15]
INTERACTION WITH ACCN3, AND FUNCTION.
DOI=10.1074/jbc.M405874200; PubMed=15317815 [NCBI, ExPASy, EBI, Israel, Japan]
Hruska-Hageman A.M., Benson C.J., Leonard A.S., Price M.P., Welsh M.J.;
"PSD-95 and Lin-7b interact with acid-sensing ion channel-3 and have opposite effects on H+- gated current.";
J. Biol. Chem. 279:46962-46968(2004).
[16]
INTERACTION WITH CXADR.
DOI=10.1242/jcs.01300; PubMed=15304526 [NCBI, ExPASy, EBI, Israel, Japan]
Ashbourne-Excoffon K.J.D., Hruska-Hageman A.M., Klotz M., Traver G.L., Zabner J.;
"A role for the PDZ-binding domain of the coxsackie B virus and adenovirus receptor (CAR) in cell adhesion and growth.";
J. Cell Sci. 117:4401-4409(2004).
[17]
FUNCTION.
DOI=10.1073/pnas.0405939101; PubMed=15358863 [NCBI, ExPASy, EBI, Israel, Japan]
Prange O., Wong T.P., Gerrow K., Wang Y.T., El-Husseini A.;
"A balance between excitatory and inhibitory synapses is controlled by PSD-95 and neuroligin.";
Proc. Natl. Acad. Sci. U.S.A. 101:13915-13920(2004).
[18]
INTERACTION WITH PRR7.
DOI=10.1016/j.bbrc.2004.11.154; PubMed=15629447 [NCBI, ExPASy, EBI, Israel, Japan]
Murata Y., Doi T., Taniguchi H., Fujiyoshi Y.;
"Proteomic analysis revealed a novel synaptic proline-rich membrane protein (PRR7) associated with PSD-95 and NMDA receptor.";
Biochem. Biophys. Res. Commun. 327:183-191(2005).
[19]
INTERACTION WITH LRFN1.
DOI=10.1016/j.neuron.2006.04.005; PubMed=16630835 [NCBI, ExPASy, EBI, Israel, Japan]
Ko J., Kim S., Chung H.S., Kim K., Han K., Kim H., Jun H., Kaang B.-K., Kim E.;
"SALM synaptic cell adhesion-like molecules regulate the differentiation of excitatory synapses.";
Neuron 50:233-245(2006).
[20]
INTERACTION WITH ANKS1B.
DOI=10.1038/nn1867; PubMed=17334360 [NCBI, ExPASy, EBI, Israel, Japan]
Jordan B.A., Fernholz B.D., Khatri L., Ziff E.B.;
"Activity-dependent AIDA-1 nuclear signaling regulates nucleolar numbers and protein synthesis in neurons.";
Nat. Neurosci. 10:427-435(2007).
[21]
X-RAY CRYSTALLOGRAPHY (1.82 ANGSTROMS) OF 302-402.
DOI=10.1016/S0092-8674(00)81307-0; PubMed=8674113 [NCBI, ExPASy, EBI, Israel, Japan]
Doyle D.A., Lee A., Lewis J., Kim E., Sheng M., Mackinnon R.;
"Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ.";
Cell 85:1067-1076(1996).
[22]
STRUCTURE BY NMR OF 155-246, AND INTERACTION WITH NOS1 AND CAPON.
DOI=10.1006/jmbi.1999.3350; PubMed=10623522 [NCBI, ExPASy, EBI, Israel, Japan]
Tochio H., Hung F., Li M., Bredt D.S., Zhang M.;
"Solution structure and backbone dynamics of the second PDZ domain of postsynaptic density-95.";
J. Mol. Biol. 295:225-237(2000).
[23]
X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS) OF 430-724.
DOI=10.1016/S1097-2765(01)00411-7; PubMed=11779504 [NCBI, ExPASy, EBI, Israel, Japan]
McGee A.W., Dakoji S.R., Olsen O., Bredt D.S., Lim W.A., Prehoda K.E.;
"Structure of the SH3-guanylate kinase module from PSD-95 suggests a mechanism for regulated assembly of MAGUK scaffolding proteins.";
Mol. Cell 8:1291-1301(2001).
[24]
X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 430-724.
DOI=10.1016/S1097-2765(01)00416-6; PubMed=11779506 [NCBI, ExPASy, EBI, Israel, Japan]
Tavares G.A., Panepucci E.H., Brunger A.T.;
"Structural characterization of the intramolecular interaction between the SH3 and guanylate kinase domains of PSD-95.";
Mol. Cell 8:1313-1325(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M96853; AAA41971.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X66474; CAA47103.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U77090; AAB38270.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A45436; A45436.
JH0800; JH0800.
RefSeq NP_062567.1; -.
UniGene Rn.9765
3D structure databases
PDB
1BE9; X-ray; 1.82 A; A=302-402.[ExPASy / RCSB / EBI]
1BFE; X-ray; 2.30 A; A=302-402.[ExPASy / RCSB / EBI]
1IU0; NMR; -; A=61-151.[ExPASy / RCSB / EBI]
1IU2; NMR; -; A=61-151.[ExPASy / RCSB / EBI]
1JXM; X-ray; 2.00 A; A=430-724.[ExPASy / RCSB / EBI]
1JXO; X-ray; 2.30 A; A/B=430-724.[ExPASy / RCSB / EBI]
1KJW; X-ray; 1.80 A; A=430-724.[ExPASy / RCSB / EBI]
1QLC; NMR; -; A=155-249.[ExPASy / RCSB / EBI]
1RGR; NMR; -; A=62-154.[ExPASy / RCSB / EBI]
1TP3; X-ray; 1.99 A; A=302-402.[ExPASy / RCSB / EBI]
1TP5; X-ray; 1.54 A; A=302-402.[ExPASy / RCSB / EBI]
1TQ3; X-ray; 1.89 A; A=302-402.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1BE9; -.
1BFE; -.
1IU0; -.
1IU2; -.
1JXM; -.
1JXO; -.
1KJW; -.
1QLC; -.
1RGR; -.
1TP3; -.
1TP5; -.
1TQ3; -.
ModBase P31016.
Protein-protein interaction databases
IntAct P31016; -.
PTM databases
PhosphoSite P31016; -.
Organism-specific databases
RGD 68424; Dlgh4.
Gene expression databases
ArrayExpress P31016; -.
GermOnline ENSRNOG00000018526; Rattus norvegicus.
Ontologies
GO
GO:0030054; Cellular component: cell junction (inferred from electronic annotation from UniProtKB-KW).
GO:0045211; Cellular component: postsynaptic membrane (inferred from direct assay from MGI).
GO:0019717; Cellular component: synaptosome (inferred from direct assay from MGI).
GO:0008022; Molecular function: protein C-terminus binding (inferred from physical interaction from UniProtKB).
GO:0005102; Molecular function: receptor binding (inferred from physical interaction from UniProtKB).
GO:0045161; Biological process: neuronal ion channel clustering (traceable author statement from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR008144; Guanylate_kin.
IPR008145; Guanylt/Ca.
IPR016313; M-assoc_guanylate_kinase.
IPR001478; PDZ.
IPR001452; SH3.
Graphical view of domain structure.
Pfam PF00625; Guanylate_kin; 1.
PF00595; PDZ; 3.
PF00018; SH3_1; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001741; MAGUK_DLGH; 1.
PRINTS PR00452; SH3DOMAIN.
ProDom PD000066; SH3; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00072; GuKc; 1.
SM00228; PDZ; 3.
SM00326; SH3; 1.
SMART graphical view of domain structure.
PROSITE PS00856; GUANYLATE_KINASE_1; 1.
PS50052; GUANYLATE_KINASE_2; 1.
PS50106; PDZ; 3.
PS50002; SH3; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P31016.
ProtoNet P31016.
Genome annotation databases
Ensembl ENSRNOG00000018526; Rattus norvegicus. [Contig view]
GeneID 29495; -.
KEGG rno:29495; -.
Phylogenomic databases
HOVERGEN P31016; -.
Other
DrugBank DB00536; Guanidine.
NextBio 609380; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Alternative splicing; Cell junction; Cell membrane; Direct protein sequencing; Lipoprotein; Membrane; Palmitate; Phosphoprotein; Postsynaptic cell membrane; Repeat; SH3 domain; Synapse.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   724  724     Disks large homolog 4. PRO_0000094562
DOMAIN   65   151  87     PDZ 1. 
DOMAIN   160   246  87     PDZ 2. 
DOMAIN   313   393  81     PDZ 3. 
DOMAIN   428   498  71     SH3. 
DOMAIN   534   709  176     Guanylate kinase-like. 
MOD_RES   142   142        Phosphoserine (By similarity). 
MOD_RES   240   240        Phosphotyrosine (By similarity). 
MOD_RES   295   295        Phosphoserine (By similarity). 
MOD_RES   397   397        Phosphotyrosine (By similarity). 
MOD_RES   415   415        Phosphoserine (By similarity). 
MOD_RES   418   418        Phosphoserine (By similarity). 
MOD_RES   432   432        Phosphotyrosine (By similarity). 
MOD_RES   580   580        Phosphotyrosine (By similarity). 
MOD_RES   604   604        Phosphotyrosine (By similarity). 
MOD_RES   701   701        Phosphotyrosine (By similarity). 
MOD_RES   715   715        Phosphotyrosine (By similarity). 
LIPID   3     3        S-palmitoyl cysteine. 
LIPID   5     5        S-palmitoyl cysteine. 
MUTAGEN   3     3        C->S: Loss of palmitoylation and targeting to postsynaptic density. 
MUTAGEN   5     5        C->S: Loss of palmitoylation and targeting to postsynaptic density. 
CONFLICT   61    61        M -> L (in Ref. 2; CAA47103). 
CONFLICT   78    78        S -> T (in Ref. 2; CAA47103). 
CONFLICT   177   182        GVGNQH -> ALGTSI (in Ref. 2; CAA47103). 
CONFLICT   200   200        A -> G (in Ref. 2; CAA47103). 
CONFLICT   254   254        S -> T (in Ref. 2; CAA47103). 
CONFLICT   540   555        LGPTKDRANDDLLSEF -> SLDPPKTVPTMIFSPSS (in Ref. 2; CAA47103). 
CONFLICT   623   625        GKH -> RDQ (in Ref. 4). 
STRAND   62    69  8      
STRAND   75    80  6      
STRAND   82    85  4      
STRAND   88    91  4      
STRAND   95    99  5      
HELIX   104   108  5      
STRAND   119   122  4      
HELIX   130   138  9      
STRAND   142   150  9      
STRAND   157   164  8      
STRAND   171   176  6      
STRAND   178   180  3      
STRAND   187   194  8      
HELIX   200   204  5      
STRAND   211   215  5      
STRAND   221   224  4      
HELIX   225   233  9      
STRAND   237   245  9      
HELIX   302   304  3      
STRAND   312   317  6      
STRAND   325   329  5      
STRAND   336   341  6      
HELIX   346   350  5      
STRAND   357   362  6      
HELIX   372   380  9      
STRAND   384   392  9      
HELIX   394   398  5      
STRAND   431   437  7      
HELIX   441   444  4      
STRAND   459   464  6      
STRAND   467   475  9      
STRAND   487   489  3      
HELIX   491   501  11      
STRAND   523   530  8      
STRAND   537   541  5      
HELIX   544   554  11      
TURN   556   558  3      
TURN   576   578  3      
HELIX   586   594  9      
STRAND   598   604  7      
STRAND   607   612  6      
HELIX   613   621  9      
STRAND   625   628  4      
HELIX   634   640  7      
STRAND   646   650  5