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UniProtKB/Swiss-Prot entry P27989


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DCMB_MOOTH
Primary accession number P27989
Secondary accession numbers None
Integrated into Swiss-Prot on August 1, 1992
Sequence was last modified on August 1, 1992 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 65)
Name and origin of the protein
Protein name Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit beta
Synonyms CODH/ACS
Carbon monoxide dehydrogenase subunit
CODH subunit
EC 1.2.7.4
EC 1.2.99.2
Gene name None
From
Moorella thermoacetica (Clostridium thermoaceticum) [TaxID: 1525] 
Taxonomy Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=1748656 [NCBI, ExPASy, EBI, Israel, Japan]
Morton T.A., Runquist J.A., Ragsdale S.W., Shanmugasundaram T., Wood H.G., Ljungdahl L.G.;
"The primary structure of the subunits of carbon monoxide dehydrogenase/acetyl-CoA synthase from Clostridium thermoaceticum.";
J. Biol. Chem. 266:23824-23828(1991).
[2]
X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
DOI=10.1126/science.1075843; PubMed=12386327 [NCBI, ExPASy, EBI, Israel, Japan]
Doukov T.I., Iverson T.M., Seravalli J., Ragsdale S.W., Drennan C.L.;
"A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase.";
Science 298:567-572(2002).
[3]
X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS).
DOI=10.1038/nsb912; PubMed=12627225 [NCBI, ExPASy, EBI, Israel, Japan]
Darnault C., Volbeda A., Kim E.J., Legrand P., Vernede X., Lindahl P.A., Fontecilla-Camps J.-C.;
"Ni-Zn-[Fe4-S4] and Ni-Ni-[Fe4-S4] clusters in closed and open subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase.";
Nat. Struct. Biol. 10:271-279(2003).
Comments
  • FUNCTION: The beta subunit (this protein) generates CO from CO(2), while the alpha subunit combines the CO with CoA and a methyl group to form acetyl-CoA. The methyl group, which is incorporated into acetyl-CoA, is transferred to the alpha subunit by a corrinoid iron-sulfur protein.
  • CATALYTIC ACTIVITY: CO + H2O + 2 oxidized ferredoxin = CO2 + 2 reduced ferredoxin + 2 H+.
  • CATALYTIC ACTIVITY: CO + H2O + A = CO2 + AH2.
  • COFACTOR: Binds 1 nickel-iron-sulfur cluster per subunit.
  • COFACTOR: Binds 2 4Fe-4S clusters per homodimer.
  • SUBUNIT: Tetramer of two alpha and two beta chains.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M62727; AAA23228.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A41670; A41670.
3D structure databases
PDB
1MJG; X-ray; 2.20 A; A/B/C/D=1-674.[ExPASy / RCSB / EBI]
1OAO; X-ray; 1.90 A; A/B=1-674.[ExPASy / RCSB / EBI]
2Z8Y; X-ray; 2.51 A; A/B/C/D=1-674.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1MJG; -.
1OAO; -.
2Z8Y; -.
ModBase P27989.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from InterPro).
GO:0051539; Molecular function: 4 iron, 4 sulfur cluster binding (inferred from electronic annotation from InterPro).
GO:0018492; Molecular function: carbon-monoxide dehydrogenase (acceptor) activity (inferred from electronic annotation from InterPro).
GO:0043885; Molecular function: carbon-monoxide dehydrogenase (ferredoxin) activity (inferred from electronic annotation from EC).
GO:0009055; Molecular function: electron carrier activity (inferred from electronic annotation from InterPro).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0016151; Molecular function: nickel ion binding (inferred from electronic annotation from InterPro).
GO:0015977; Biological process: carbon utilization by fixation of carbon dioxide (inferred from electronic annotation from UniProtKB-KW).
GO:0022900; Biological process: electron transport chain (inferred from electronic annotation from UniProtKB-KW).
GO:0006810; Biological process: transport (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR002110; ANK.
IPR016101; CO_DHase_a-bundle.
IPR010047; CO_DHase_cat.
IPR004137; Prismane.
IPR016099; Prismane-like_a/b-sand.
Graphical view of domain structure.
Gene3D G3DSA:1.20.1270.30; CO_DH_a-bundle; 1.
G3DSA:3.40.50.2030; Prismane-like_a/b-sand; 2.
Pfam PF03063; Prismane; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF005023; CODH; 1.
PRINTS PR01415; ANKYRIN.
TIGRFAMs TIGR01702; CO_DH_cata; 1.
BLOCKS P27989.
ProtoNet P27989.
Other
LinkHub P27989; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; 4Fe-4S; Carbon dioxide fixation; Electron transport; Iron; Iron-sulfur; Metal-binding; Nickel; Oxidoreductase; Transport.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   674  674     Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit beta. PRO_0000079808
METAL   59    59        Iron-sulfur 1 (4Fe-4S); shared with dimeric partner. 
METAL   67    67        Iron-sulfur 1 (4Fe-4S); shared with dimeric partner. 
METAL   68    68        Iron-sulfur 2 (4Fe-4S). 
METAL   71    71        Iron-sulfur 2 (4Fe-4S). 
METAL   76    76        Iron-sulfur 2 (4Fe-4S). 
METAL   90    90        Iron-sulfur 2 (4Fe-4S). 
METAL   283   283        Nickel-iron-sulfur (Ni-4Fe-4S); via tele nitrogen. 
METAL   317   317        Nickel-iron-sulfur (Ni-4Fe-4S). 
METAL   355   355        Nickel-iron-sulfur (Ni-4Fe-4S). 
METAL   470   470        Nickel-iron-sulfur (Ni-4Fe-4S). 
METAL   500   500        Nickel-iron-sulfur (Ni-4Fe-4S). 
METAL   550   550        Nickel-iron-sulfur (Ni-4Fe-4S). 
STRAND   18    21  4      
HELIX   31    42  12      
HELIX   48    55  8      
HELIX   60    63  4      
STRAND   81    83  3      
HELIX   94   128  35      
HELIX   140   149  10      
HELIX   159   175  17      
HELIX   184   187  4      
HELIX   192   200  9      
HELIX   208   219  12      
HELIX   227   256  30      
STRAND   262   267  6      
HELIX   268   270  3      
STRAND   275   283  9      
HELIX   285   296  12      
HELIX   299   304  6      
STRAND   310   315  6      
HELIX   316   326  11      
STRAND   330   332  3      
HELIX   334   336  3      
HELIX   337   341  5      
STRAND   348   351  4      
STRAND   353   355  3      
HELIX   360   364  5      
TURN   365   368  4      
STRAND   370   373  4      
STRAND   383   385  3      
HELIX   390   392  3      
HELIX   393   412  20      
STRAND   425   429  5      
HELIX   433   441  9      
HELIX   448   457  10      
STRAND   463   467  5      
HELIX   479   490  12      
STRAND   493   498  6      
HELIX   499   507  9      
TURN   508   511  4      
HELIX   513   515  3      
HELIX   516   519  4      
HELIX   522   534  13      
STRAND   543   550  8      
HELIX   553   567  15      
HELIX   571   573  3      
STRAND   574   580  7      
HELIX   586   597  12      
STRAND   601   606  6      
TURN   609   612  4      
HELIX   614   621  8      
HELIX   623   627  5      
STRAND   631   634  4      
HELIX   638   665  28      
Sequence information
Length: 674 AA [This is the length of the unprocessed precursor] Molecular weight: 72924 Da [This is the MW of the unprocessed precursor] CRC64: 54BA3D816C25F9FC [This is a checksum on the sequence]
        10         20         30         40         50         60 
MPRFRDLSHN CRPSEAPRVM EPKNRDRTVD PAVLEMLVKS KDDKVITAFD RFVAQQPQCK 

        70         80         90        100        110        120 
IGYEGICCRF CMAGPCRIKA TDGPGSRGIC GASAWTIVAR NVGLMILTGA AAHCEHGNHI 

       130        140        150        160        170        180 
AHALVEMAEG KAPDYSVKDE AKLKEVCRRV GIEVEGKSVL ELAQEVGEKA LEDFRRLKGE 

       190        200        210        220        230        240 
GEATWLMTTI NEGRKEKFRT HNVVPFGIHA SISELVNQAH MGMDNDPVNL VFSAIRVALA 

       250        260        270        280        290        300 
DYTGEHIATD FSDILFGTPQ PVVSEANMGV LDPDQVNFVL HGHNPLLSEI IVQAAREMEG 

       310        320        330        340        350        360 
EAKAAGAKGI NLVGICCTGN EVLMRQGIPL VTSFASQELA ICTGAIDAMC VDVQCIMPSI 

       370        380        390        400        410        420 
SAVAECYHTR IITTADNAKI PGAYHIDYQT ATAIESAKTA IRMAIEAFKE RKESNRPVYI 

       430        440        450        460        470        480 
PQIKNRVVAG WSLEALTKLL ATQNAQNPIR VLNQAILDGE LAGVALICGC NNLKGFQDNS 

       490        500        510        520        530        540 
HLTVMKELLK NNVFVVATGC SAQAAGKLGL LDPANVETYC GDGLKGFLKR LGEGANIEIG 

       550        560        570        580        590        600 
LPPVFHMGSC VDNSRAVDLL MAMANDLGVD TPKVPFVASA PEAMSGKAAA IGTWWVSLGV 

       610        620        630        640        650        660 
PTHVGTMPPV EGSDLIYSIL TQIASDVYGG YFIFEMDPQV AARKILDALE YRTWKLGVHK 

       670 
EVAERYETKL CQGY 

P27989 in FASTA format

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