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UniProtKB/Swiss-Prot entry P26440


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name IVD_HUMAN
Primary accession number P26440
Secondary accession number Q96AF6
Integrated into Swiss-Prot on August 1, 1992
Sequence was last modified on August 1, 1992 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 96)
Name and origin of the protein
Protein name Isovaleryl-CoA dehydrogenase, mitochondrial [Precursor]
Synonyms IVD
EC 1.3.99.10
Gene name
Name: IVD
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2318964 [NCBI, ExPASy, EBI, Israel, Japan]
Matsubara Y., Ito M., Glassberg R., Satyabhama S., Ikeda Y., Tanaka K.;
"Nucleotide sequence of messenger RNA encoding human isovaleryl-coenzyme A dehydrogenase and its expression in isovaleric acidemia fibroblasts.";
J. Clin. Invest. 85:1058-1064(1990).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1086/302751; PubMed=10677295 [NCBI, ExPASy, EBI, Israel, Japan]
Vockley J., Rogan P.K., Anderson B.D., Willard J., Seelan R.S., Smith D.I., Liu W.;
"Exon skipping in IVD RNA processing in isovaleric acidemia caused by point mutations in the coding region of the IVD gene.";
Am. J. Hum. Genet. 66:356-367(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE OF 381-423.
DOI=10.1006/geno.1993.1111; PubMed=8468053 [NCBI, ExPASy, EBI, Israel, Japan]
Parimoo B., Tanaka K.;
"Structural organization of the human isovaleryl-CoA dehydrogenase gene.";
Genomics 15:582-590(1993).
[5]
PROTEIN SEQUENCE OF N-TERMINUS.
PubMed=1310317 [NCBI, ExPASy, EBI, Israel, Japan]
Vockley J., Nagao M., Parimoo B., Tanaka K.;
"The variant human isovaleryl-CoA dehydrogenase gene responsible for type II isovaleric acidemia determines an RNA splicing error, leading to the deletion of the entire second coding exon and the production of a truncated precursor protein that interacts poorly with mitochondrial import receptors.";
J. Biol. Chem. 267:2494-2501(1992).
[6]
PROTEIN SEQUENCE OF 30-47.
TISSUE=Platelet;
DOI=10.1038/nbt810; PubMed=12665801 [NCBI, ExPASy, EBI, Israel, Japan]
Gevaert K., Goethals M., Martens L., Van Damme J., Staes A., Thomas G.R., Vandekerckhove J.;
"Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.";
Nat. Biotechnol. 21:566-569(2003).
[7]
ACTIVE SITE, AND MUTAGENESIS OF GLU-283.
DOI=10.1021/bi00032a007; PubMed=7640268 [NCBI, ExPASy, EBI, Israel, Japan]
Mohsen A.W., Vockley J.;
"Identification of the active site catalytic residue in human isovaleryl-CoA dehydrogenase.";
Biochemistry 34:10146-10152(1995).
[8]
X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) OF 35-421.
DOI=10.1021/bi970422u; PubMed=9214289 [NCBI, ExPASy, EBI, Israel, Japan]
Tiffany K.A., Roberts D.L., Wang M., Paschke R., Mohsen A.W., Vockley J., Kim J.-J.P.;
"Structure of human isovaleryl-CoA dehydrogenase at 2.6-A resolution: structural basis for substrate specificity.";
Biochemistry 36:8455-8464(1997).
[9]
VARIANTS IVA PRO-42 AND VAL-199.
PubMed=2063866 [NCBI, ExPASy, EBI, Israel, Japan]
Vockley J., Parimoo B., Tanaka K.;
"Molecular characterization of four different classes of mutations in the isovaleryl-CoA dehydrogenase gene responsible for isovaleric acidemia.";
Am. J. Hum. Genet. 49:147-157(1991).
[10]
VARIANTS IVA PRO-50; ASN-69; VAL-311; ARG-357; ALA-371; CYS-392 AND LEU-411.
DOI=10.1021/bi973096r; PubMed=9665741 [NCBI, ExPASy, EBI, Israel, Japan]
Mohsen A.-W.A., Anderson B.D., Volchenboum S.L., Battaile K.P., Tiffany K.A., Roberts D.L., Kim J.-J.P., Vockley J.;
"Characterization of molecular defects in isovaleryl-CoA dehydrogenase in patients with isovaleric acidemia.";
Biochemistry 37:10325-10335(1998).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M34192; AAA52711.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF191218; AAF20182.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF191214; AAF20182.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF191215; AAF20182.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF191216; AAF20182.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF191217; AAF20182.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC017202; AAH17202.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF038318; AAB92584.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A37033; A37033.
RefSeq NP_002216.1; -.
UniGene Hs.449599
3D structure databases
PDB
1IVH; X-ray; 2.60 A; A/B/C/D=30-423.[ExPASy / RCSB / EBI]
PDBsum 1IVH; -.
ModBase P26440.
PTM databases
PhosphoSite P26440; -.
Enzyme and pathway databases
Reactome REACT_13; Metabolism of amino acids.
2D gel databases
REPRODUCTION-2DPAGE IPI00645805; -.
Organism-specific databases
H-InvDB HIX0012130; -.
HGNC HGNC:6186; IVD.
GenAtlas IVD.
MIM 243500; phenotype. [NCBI / EBI]
607036; gene. [NCBI / EBI]
Orphanet 33; Isovaleric acidemia.
PharmGKB PA29984; -.
GeneCards P26440.
Gene expression databases
ArrayExpress P26440; -.
CleanEx HS_IVD; -.
GermOnline ENSG00000128928; Homo sapiens.
Ontologies
GO
GO:0005759; Cellular component: mitochondrial matrix (non-traceable author statement from ProtInc).
GO:0009055; Molecular function: electron carrier activity (inferred from electronic annotation from InterPro).
GO:0050660; Molecular function: FAD binding (inferred from electronic annotation from InterPro).
GO:0008470; Molecular function: isovaleryl-CoA dehydrogenase activity (traceable author statement from ProtInc).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR006091; Acyl-CoA_DHase/Oxase_M.
IPR006089; Acyl-CoA_DHase_CS.
IPR006092; Acyl-CoA_DHase_N.
IPR006090; Acyl-CoA_Oxase/DHase_1.
IPR013786; AcylCoA_DH/ox_N.
IPR013764; AcylCoA_oxidase/DH_1/2_C.
Graphical view of domain structure.
Gene3D G3DSA:2.40.110.10; Acyl_CoA_DH/ox_M; 1.
G3DSA:1.10.540.10; AcylCoA_DH/ox_N; 1.
G3DSA:1.20.140.10; AcylCoA_DH_1/2_C; 1.
Pfam PF00441; Acyl-CoA_dh_1; 1.
PF02770; Acyl-CoA_dh_M; 1.
PF02771; Acyl-CoA_dh_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00072; ACYL_COA_DH_1; 1.
PS00073; ACYL_COA_DH_2; 1.
BLOCKS P26440.
ProtoNet P26440.
Genome annotation databases
Ensembl ENSG00000128928; Homo sapiens. [Contig view]
GeneID 3712; -.
KEGG hsa:3712; -.
NMPDR fig|9606.3.peg.10499; -.
Phylogenomic databases
HOGENOM P26440; -.
HOVERGEN P26440; -.
Other
LinkHub P26440; -.
NextBio 14547; -.
SOURCE IVD; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acetylation; Direct protein sequencing; Disease mutation; FAD; Flavoprotein; Mitochondrion; Oxidoreductase; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    29  29     Mitochondrion. 
CHAIN   30   423  394     Isovaleryl-CoA dehydrogenase, mitochondrial. PRO_0000000531
ACT_SITE   283   283        Proton acceptor. 
MOD_RES   75    75        N6-acetyllysine (By similarity). 
VARIANT   42    42  1     L -> P (in IVA). VAR_000423 
VARIANT   50    50  1     R -> P (in IVA). VAR_015960 
VARIANT   69    69  1     D -> N (in IVA). VAR_015961 
VARIANT   199   199  1     G -> V (in IVA). VAR_000424 
VARIANT   311   311  1     A -> V (in IVA). VAR_015962 
VARIANT   357   357  1     C -> R (in IVA). VAR_015963 
VARIANT   371   371  1     V -> A (in IVA). VAR_015964 
VARIANT   392   392  1     R -> C (in IVA). VAR_015965 
VARIANT   411   411  1     R -> L (in IVA). VAR_015966 
MUTAGEN   283   283        E->D: Residual activity. 
MUTAGEN   283   283        E->G,Q: Loss of activity. 
CONFLICT   10    10        W -> C (in Ref. 3; AAH17202). 
HELIX   38    40  3      
HELIX   44    60  17      
TURN   61    64  4      
HELIX   65    71  7      
HELIX   77    87  11      
TURN   90    93  4      
HELIX   96    98  3      
HELIX   105   118  14      
HELIX   120   130  11      
TURN   131   133  3      
HELIX   134   140  7      
HELIX   143   154  12      
STRAND   160   163  4      
STRAND   169   172  4      
HELIX   173   175  3      
STRAND   179   182  4      
STRAND   184   197  14      
HELIX   199   201  3      
STRAND   203   211  9      
HELIX   218   221  4      
STRAND   222   228  7      
STRAND   234   236  3      
STRAND   242   244  3      
STRAND   250   261  12      
HELIX   262   264  3      
STRAND   265   267  3      
HELIX   272   287  16      
HELIX   289   306  18      
HELIX   316   318  3      
HELIX   320   348  29      
HELIX   354   379  26      
HELIX   380   384  5      
HELIX   390   399  10      
TURN   400   404  5      
HELIX   407   419  13      
Sequence information
Length: 423 AA [This is the length of the unprocessed precursor] Molecular weight: 46319 Da [This is the MW of the unprocessed precursor] CRC64: 121AF14C7F1FA13D [This is a checksum on the sequence]
        10         20         30         40         50         60 
MATATRLLGW RVASWRLRPP LAGFVSQRAH SLLPVDDAIN GLSEEQRQLR QTMAKFLQEH 

        70         80         90        100        110        120 
LAPKAQEIDR SNEFKNLREF WKQLGNLGVL GITAPVQYGG SGLGYLEHVL VMEEISRASG 

       130        140        150        160        170        180 
AVGLSYGAHS NLCINQLVRN GNEAQKEKYL PKLISGEYIG ALAMSEPNAG SDVVSMKLKA 

       190        200        210        220        230        240 
EKKGNHYILN GNKFWITNGP DADVLIVYAK TDLAAVPASR GITAFIVEKG MPGFSTSKKL 

       250        260        270        280        290        300 
DKLGMRGSNT CELIFEDCKI PAANILGHEN KGVYVLMSGL DLERLVLAGG PLGLMQAVLD 

       310        320        330        340        350        360 
HTIPYLHVRE AFGQKIGHFQ LMQGKMADMY TRLMACRQYV YNVAKACDEG HCTAKDCAGV 

       370        380        390        400        410        420 
ILYSAECATQ VALDGIQCFG GNGYINDFPM GRFLRDAKLY EIGAGTSEVR RLVIGRAFNA 


DFH 

P26440 in FASTA format

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