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UniProtKB/Swiss-Prot entry P25854

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CALM1_ARATH
Primary accession number P25854
Secondary accession numbers Q03510 Q9FJ05
Integrated into Swiss-Prot on May 1, 1992
Sequence was last modified on January 23, 2007 (Sequence version 3)
Annotations were last modified on    November 25, 2008 (Entry version 88)
Name and origin of the protein
Protein name Calmodulin-1/4
Synonym CaM-1/4
Gene names
Name: CAM1
OrderedLocusNames: At5g37780
ORFNames: K22F20.2, T31G3.3
and
Name: CAM4
OrderedLocusNames: At1g66410
ORFNames: T27F4.1, F28G11.13
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
 NUCLEOTIDE SEQUENCE [MRNA] (CAM4).
DOI=10.1007/BF00014930; PubMed=8507825 [NCBI, ExPASy, EBI, Israel, Japan]
Gawienowski M.C., Szymanski D., Perera I.Y., Zielinski R.E.;
"Calmodulin isoforms in Arabidopsis encoded by multiple divergent mRNAs.";
Plant Mol. Biol. 22:215-225(1993).
[2]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (CAM1).
STRAIN=cv. Columbia;
DOI=10.1093/dnares/5.5.297; PubMed=9872454 [NCBI, ExPASy, EBI, Israel, Japan]
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence features of the regions of 1,013,767 bp covered by sixteen physically assigned P1 and TAC clones.";
DNA Res. 5:297-308(1998).
[3]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (CAM4).
STRAIN=cv. Columbia;
DOI=10.1038/35048500; PubMed=11130712 [NCBI, ExPASy, EBI, Israel, Japan]
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[4]
 NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (CAM1 AND CAM4).
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[5]
 NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (CAM4).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[6]
 NUCLEOTIDE SEQUENCE [MRNA] OF 14-149 (CAM1).
PubMed=16668320 [NCBI, ExPASy, EBI, Israel, Japan]
Ling V., Perera I.Y., Zielinski R.E.;
"Primary structures of Arabidopsis calmodulin isoforms deduced from the sequences of cDNA clones.";
Plant Physiol. 96:1196-1202(1991).
[7]
 GENE FAMILY, AND NOMENCLATURE.
DOI=10.1046/j.1469-8137.2003.00845.x
McCormack E., Braam J.;
"Calmodulins and related potential calcium sensors of Arabidopsis.";
New Phytol. 159:585-598(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
Z12022; CAA78057.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB016873; BAB10354.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB026662; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
AC020665; AAG52168.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC074025; AAG51164.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY059809; AAL24291.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF370293; AAK44108.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY048276; AAK82538.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY072520; AAL66935.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY072628; AAL62019.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY113902; AAM44950.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY088476; AAM66012.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M38379; AAA32762.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR E96689; E96689.
S35185; S35185.
T50929; T50929.
RefSeq NP_176814.1; -.
NP_198594.1; -.
UniGene At.23146
3D structure databases
HSSP P02593; 1CDM. [HSSP ENTRY / SWISS-3DIMAGE / PDB]
SMR P25854; 1-148.
ModBase P25854.
Protein-protein interaction databases
IntAct P25854; -.
Organism-specific databases
TAIR At1g66410; -.
At5g37780; -.
Gene expression databases
ArrayExpress P25854; -.
GermOnline AT5G37780; Arabidopsis thaliana.
Ontologies
GO
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from InterPro).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR011992; EF-Hand_type.
IPR002048; EF_hand_Ca_bd.
Graphical view of domain structure.
Gene3D G3DSA:1.10.238.10; EF-Hand_type; 1.
Pfam PF00036; efhand; 4.
Pfam graphical view of domain structure.
ProDom PD000012; EF-hand; 2.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00054; EFh; 4.
SMART graphical view of domain structure.
PROSITE PS00018; EF_HAND_1; 4.
PS50222; EF_HAND_2; 4.
PROSITE graphical view of domain structure (profiles).
BLOCKS P25854.
ProtoNet P25854.
Proteomic databases
ProMEX P25854; -.
Genome annotation databases
GeneID 833756; -.
842959; -.
GenomeReviews CT485782_GR; AT1G66410.
BA000015_GR; AT5G37780.
KEGG ath:AT1G66410; -.
ath:AT5G37780; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Acetylation; Calcium; Complete proteome; Methylation; Repeat.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
INIT_MET   1     1        Removed (By similarity). 
CHAIN   2   149  148     Calmodulin-1/4. PRO_0000198280
DOMAIN   8    43  36     EF-hand 1. 
DOMAIN   44    79  36     EF-hand 2. 
DOMAIN   81   116  36     EF-hand 3. 
DOMAIN   117   149  33     EF-hand 4. 
CA_BIND   21    32  12     1. 
CA_BIND   57    68  12     2. 
CA_BIND   94   105  12     3. 
CA_BIND   130   141  12     4. 
MOD_RES   2     2        N-acetylalanine (By similarity). 
MOD_RES   116   116        N6,N6,N6-trimethyllysine (By similarity). 
CONFLICT   139   139        Y -> H (in Ref. 1; CAA78057). 
Sequence information
Length: 149 AA [This is the length of the unprocessed precursor] Molecular weight: 16862 Da [This is the MW of the unprocessed precursor] CRC64: 805B06B97552ECC1 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG 

        70         80         90        100        110        120 
NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF ISAAELRHVM TNLGEKLTDE 

       130        140 
EVEEMIREAD VDGDGQINYE EFVKIMMAK
P25854 in FASTA format

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