ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry P24626


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name CHI1_ORYSJ
Primary accession number P24626
Secondary accession number Q42994
Integrated into Swiss-Prot on March 1, 1992
Sequence was last modified on November 22, 2005 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 73)
Name and origin of the protein
Protein name Basic endochitinase 1 [Precursor]
Synonym EC 3.2.1.14
Gene name
Name: Cht-3
OrderedLocusNames: Os06g0726100, LOC_Os06g51050
ORFNames: P0017G10.2, P0548E04.22
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
TISSUE=Seedling;
DOI=10.1007/BF00023999; PubMed=1893114 [NCBI, ExPASy, EBI, Israel, Japan]
Huang J.K., Wen L., Swegle M., Tran H.C., Thin T.H., Naylor H.M., Muthukrishnan S., Reeck G.R.;
"Nucleotide sequence of a rice genomic clone that encodes a class I endochitinase.";
Plant Mol. Biol. 16:479-480(1991).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1007/BF00280194; PubMed=7901749 [NCBI, ExPASy, EBI, Israel, Japan]
Nishizawa Y., Kishimoto N., Saito A., Hibi T.;
"Sequence variation, differential expression and chromosomal location of rice chitinase genes.";
Mol. Gen. Genet. 241:1-10(1993).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
The international rice genome sequencing project (IRGSP) consortium;
"Oryza sativa nipponbare chromosome 6 genomic DNA sequence.";
Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X54367; CAA38249.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
D16223; BAA03751.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP003685; BAD61708.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP004685; BAD61800.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK061280; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
PIR S14948; S14948.
RefSeq NP_001058626.1; -.
UniGene Os.2692
3D structure databases
HSSP P02877; 1HEV. [HSSP ENTRY / PDB]
SMR P24626; 19-317.
ModBase P24626.
Organism-specific databases
Gramene P24626; -.
Ontologies
GO
GO:0008061; Molecular function: chitin binding (inferred from electronic annotation from InterPro).
GO:0004568; Molecular function: chitinase activity (inferred from electronic annotation from InterPro).
GO:0016998; Biological process: cell wall catabolic process (inferred from electronic annotation from InterPro).
GO:0006032; Biological process: chitin catabolic process (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR001002; Chitin_bd_1.
IPR016283; Glyco_hydro_19.
IPR000726; Glyco_hydro_19_cat.
Graphical view of domain structure.
Gene3D G3DSA:3.30.60.10; Chitin_bd_1; 1.
PANTHER PTHR22595; Glyco_hydro_19_cat; 1.
Pfam PF00187; Chitin_bind_1; 1.
PF00182; Glyco_hydro_19; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001060; Endochitinase; 1.
PRINTS PR00451; CHITINBINDNG.
ProDom PD000609; Chitin_binding_1; 1.
PD354900; Glyco_hydro_19; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00270; ChtBD1; 1.
SMART graphical view of domain structure.
PROSITE PS00026; CHIT_BIND_I_1; 1.
PS50941; CHIT_BIND_I_2; 1.
PS00773; CHITINASE_19_1; 1.
PS00774; CHITINASE_19_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P24626.
ProtoNet P24626.
Genome annotation databases
GeneID 4342114; -.
KEGG osa:4342114; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Carbohydrate metabolism; Chitin degradation; Chitin-binding; Glycosidase; Hydrolase; Plant defense; Polysaccharide degradation; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    18  18     Potential. 
CHAIN   19   320  302     Basic endochitinase 1. PRO_0000005305
DOMAIN   19    59  41     Chitin-binding type-1. 
DISULFID   21    36        By similarity. 
DISULFID   30    42        By similarity. 
DISULFID   35    49        By similarity. 
DISULFID   53    57        By similarity. 
DISULFID   97   159        By similarity. 
DISULFID   172   180        By similarity. 
DISULFID   279   311        By similarity. 
CONFLICT   98    98        A -> R (in Ref. 1; CAA38249). 
CONFLICT   122   122        G -> R (in Ref. 1; CAA38249). 
CONFLICT   183   183        G -> A (in Ref. 1; CAA38249). 
CONFLICT   202   206        PAGQA -> RGAG (in Ref. 1; CAA38249). 
CONFLICT   223   223        Missing (in Ref. 1; CAA38249). 
Sequence information
Length: 320 AA [This is the length of the unprocessed precursor] Molecular weight: 33681 Da [This is the MW of the unprocessed precursor] CRC64: D7331BF4A6B592E3 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MRALALAVVA MAVVAVRGEQ CGSQAGGALC PNCLCCSQYG WCGSTSDYCG AGCQSQCSGG 

        70         80         90        100        110        120 
CGGGPTPPSS GGGSGVASII SPSLFDQMLL HRNDQACAAK GFYTYDAFVA AANAYPDFAT 

       130        140        150        160        170        180 
TGDADTCKRE VAAFLAQTSH ETTGGWPTAP DGPYSWGYCF KEENNGNAPT YCEPKPEWPC 

       190        200        210        220        230        240 
AAGKKYYGRG PIQITYNYNY GPAGQAIGSD LLNNPDLVAS DATVSFKTAF WFWMTPQSPK 

       250        260        270        280        290        300 
PSCHAVITGQ WTPSADDQAA GRVPGYGEIT NIINGGVECG HGADDKVADR IGFYKRYCDM 

       310        320 
LGVSYGDNLD CYNQRPYPPS 

P24626 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by au flag APAF Australia Mirror sites: Brazil  Canada  China  Korea  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!