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UniProtKB/Swiss-Prot entry P23109


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name AMPD1_HUMAN
Primary accession number P23109
Secondary accession number Q5TF00
Integrated into Swiss-Prot on November 1, 1991
Sequence was last modified on November 1, 1991 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 75)
Name and origin of the protein
Protein name AMP deaminase 1
Synonyms EC 3.5.4.6
Myoadenylate deaminase
AMP deaminase isoform M
Gene name
Name: AMPD1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=2345176 [NCBI, ExPASy, EBI, Israel, Japan]
Sabina R.L., Morisaki T., Clarke P., Eddy R., Shows T.B., Morton C.C., Holmes E.W.;
"Characterization of the human and rat myoadenylate deaminase genes.";
J. Biol. Chem. 265:9423-9433(1990).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=1370861 [NCBI, ExPASy, EBI, Israel, Japan]
Sabina R.L., Fishbein W.N., Pezeshkpour G., Clarke P.R., Holmes E.W.;
"Molecular analysis of the myoadenylate deaminase deficiencies.";
Neurology 42:170-179(1992).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature04727; PubMed=16710414 [NCBI, ExPASy, EBI, Israel, Japan]
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K., Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.;
"The DNA sequence and biological annotation of human chromosome 1.";
Nature 441:315-321(2006).
[4]
VARIANT LEU-48.
PubMed=1631143 [NCBI, ExPASy, EBI, Israel, Japan]
Morisaki T., Gross M., Morisaki H., Pongratz D., Zoellner N., Holmes E.W.;
"Molecular basis of AMP deaminase deficiency in skeletal muscle.";
Proc. Natl. Acad. Sci. U.S.A. 89:6457-6461(1992).
[5]
VARIANTS AMPDDM TRP-388 AND HIS-425.
DOI=10.1002/1098-1004(200012)16:6<467::AID-HUMU3>3.3.CO;2-M; PubMed=11102975 [NCBI, ExPASy, EBI, Israel, Japan]
Morisaki H., Higuchi I., Abe M., Osame M., Morisaki T.;
"First missense mutations (R388W and R425H) of AMPD1 accompanied with myopathy found in a Japanese patient.";
Hum. Mutat. 16:467-472(2000).
[6]
VARIANT [LARGE SCALE ANALYSIS] HIS-633.
DOI=10.1126/science.1133427; PubMed=16959974 [NCBI, ExPASy, EBI, Israel, Japan]
Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V., Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E.;
"The consensus coding sequences of human breast and colorectal cancers.";
Science 314:268-274(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M37931; AAG24258.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37920; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37921; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37922; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37923; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37924; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37927; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37928; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37929; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M37930; AAG24258.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M60092; AAA57281.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL096773; CAI18830.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR I39444; I39444.
RefSeq NP_000027.1; -.
UniGene Hs.89570
3D structure databases
ModBase P23109.
PTM databases
PhosphoSite P23109; -.
Enzyme and pathway databases
Reactome REACT_1698; Nucleotide metabolism.
Organism-specific databases
H-InvDB HIX0000913; -.
HGNC HGNC:468; AMPD1.
GenAtlas AMPD1.
MIM 102770; gene+phenotype. [NCBI / EBI]
Orphanet 45; Adenosine monophosphate deaminase deficiency.
PharmGKB PA24776; -.
GeneCards P23109.
Gene expression databases
ArrayExpress P23109; -.
CleanEx HS_AMPD1; -.
GermOnline ENSG00000116748; Homo sapiens.
Ontologies
GO
GO:0003876; Molecular function: AMP deaminase activity (traceable author statement from ProtInc).
GO:0009168; Biological process: purine ribonucleoside monophosphate biosynthetic process (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR006650; A/AMP_deam_AS.
IPR001365; A/AMP_deaminase.
IPR006329; AMP_deaminase.
IPR016297; AMP_deaminase_met.
Graphical view of domain structure.
Pfam PF00962; A_deaminase; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001251; AMP_deaminase_met; 1.
TIGRFAMs TIGR01429; AMP_deaminase; 1.
PROSITE PS00485; A_DEAMINASE; 1.
ProtoNet P23109.
Genome annotation databases
Ensembl ENSG00000116748; Homo sapiens. [Contig view]
GeneID 270; -.
KEGG hsa:270; -.
Phylogenomic databases
HOVERGEN P23109; -.
Other
DrugBank DB00131; Adenosine monophosphate.
NextBio 1061; -.
SOURCE AMPD1; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Disease mutation; Hydrolase; Nucleotide metabolism; Polymorphism.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   747  747     AMP deaminase 1. PRO_0000194403
ACT_SITE   363   363        By similarity. 
ACT_SITE   573   573        By similarity. 
ACT_SITE   649   649        By similarity. 
ACT_SITE   650   650        By similarity. 
VARIANT   48    48  1     P -> L (polymorphism; activity comparable to wild-type). VAR_013270 
VARIANT   388   388  1     R -> W (in AMPDDM; loss of activity). VAR_013271 
VARIANT   425   425  1     R -> H (in AMPDDM; loss of activity). VAR_013272 
VARIANT   633   633  1     P -> H (in a colorectal cancer sample; somatic mutation). VAR_035801 
Sequence information
Length: 747 AA [This is the length of the unprocessed precursor] Molecular weight: 86490 Da [This is the MW of the unprocessed precursor] CRC64: 1E15EBEE98B95763 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MPLFKLPAEE KQIDDAMRNF AEKVFASEVK DEGGRQEISP FDVDEICPIS HHEMQAHIFH 

        70         80         90        100        110        120 
LETLSTSTEA RRKKRFQGRK TVNLSIPLSE TSSTKLSHID EYISSSPTYQ TVPDFQRVQI 

       130        140        150        160        170        180 
TGDYASGVTV EDFEIVCKGL YRALCIREKY MQKSFQRFPK TPSKYLRNID GEAWVANESF 

       190        200        210        220        230        240 
YPVFTPPVKK GEDPFRTDNL PENLGYHLKM KDGVVYVYPN EAAVSKDEPK PLPYPNLDTF 

       250        260        270        280        290        300 
LDDMNFLLAL IAQGPVKTYT HRRLKFLSSK FQVHQMLNEM DELKELKNNP HRDFYNCRKV 

       310        320        330        340        350        360 
DTHIHAAACM NQKHLLRFIK KSYQIDADRV VYSTKEKNLT LKELFAKLKM HPYDLTVDSL 

       370        380        390        400        410        420 
DVHAGRQTFQ RFDKFNDKYN PVGASELRDL YLKTDNYING EYFATIIKEV GADLVEAKYQ 

       430        440        450        460        470        480 
HAEPRLSIYG RSPDEWSKLS SWFVCNRIHC PNMTWMIQVP RIYDVFRSKN FLPHFGKMLE 

       490        500        510        520        530        540 
NIFMPVFEAT INPQADPELS VFLKHITGFD SVDDESKHSG HMFSSKSPKP QEWTLEKNPS 

       550        560        570        580        590        600 
YTYYAYYMYA NIMVLNSLRK ERGMNTFLFR PHCGEAGALT HLMTAFMIAD DISHGLNLKK 

       610        620        630        640        650        660 
SPVLQYLFFL AQIPIAMSPL SNNSLFLEYA KNPFLDFLQK GLMISLSTDD PMQFHFTKEP 

       670        680        690        700        710        720 
LMEEYAIAAQ VFKLSTCDMC EVARNSVLQC GISHEEKVKF LGDNYLEEGP AGNDIRRTNV 

       730        740 
AQIRMAYRYE TWCYELNLIA EGLKSTE 

P23109 in FASTA format

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