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UniProtKB/Swiss-Prot entry P22894


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name MMP8_HUMAN
Primary accession number P22894
Secondary accession number Q45F99
Integrated into Swiss-Prot on August 1, 1991
Sequence was last modified on August 1, 1991 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 101)
Name and origin of the protein
Protein name Neutrophil collagenase [Precursor]
Synonyms EC 3.4.24.34
Matrix metalloproteinase-8
MMP-8
PMNL collagenase
PMNL-CL
Gene name
Name: MMP8
Synonyms: CLG1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND PROTEIN SEQUENCE OF 314-337; 347-363 AND 424-441.
TISSUE=Neutrophil;
PubMed=2164002 [NCBI, ExPASy, EBI, Israel, Japan]
Hasty K.A., Pourmotabbed T.F., Goldberg G.I., Thompson J.P., Spinella D.G., Stevens R.M., Mainardi C.L.;
"Human neutrophil collagenase. A distinct gene product with homology to other matrix metalloproteinases.";
J. Biol. Chem. 265:11421-11424(1990).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS CYS-3; ILE-32; GLU-87; GLU-154; VAL-193; TYR-246; ALA-436 AND THR-460.
Livingston R.J., Rieder M.J., Shaffer T., Bertucci C., Baier C.N., Rajkumar N., Willa H.T., Daniels M., Downing T.K., Stanaway I.B., Nguyen C.P., Gildersleeve H., Cassidy C.M., Johnson E.J., Swanson J.E., McFarland I., Yool B., Park C., Nickerson D.A.;
"NIEHS-SNPs, environmental genome project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu).";
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Lung;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
PROTEIN SEQUENCE OF 21-140, AND VARIANT ILE-32.
TISSUE=Neutrophil;
PubMed=2159879 [NCBI, ExPASy, EBI, Israel, Japan]
Knaeuper V., Kraemer S., Reinke H., Tschesche H.;
"Characterization and activation of procollagenase from human polymorphonuclear leucocytes. N-terminal sequence determination of the proenzyme and various proteolytically activated forms.";
Eur. J. Biochem. 189:295-300(1990).
[5]
PROTEIN SEQUENCE OF 21-103.
TISSUE=Neutrophil;
PubMed=1662606 [NCBI, ExPASy, EBI, Israel, Japan]
Blaeser J., Knaeuper V., Osthues A., Reinke H., Tschesche H.;
"Mercurial activation of human polymorphonuclear leucocyte procollagenase.";
Eur. J. Biochem. 202:1223-1230(1991).
[6]
PROTEIN SEQUENCE OF 85-120, AND CHARACTERIZATION.
TISSUE=Neutrophil;
DOI=10.1021/bi00499a008; PubMed=2176876 [NCBI, ExPASy, EBI, Israel, Japan]
Mallya S.K., Mookthiar K.A., Gao Y., Brew K., Dioszegi M., Birkedal-Hansen H., van Wart H.E.;
"Characterization of 58-kilodalton human neutrophil collagenase: comparison with human fibroblast collagenase.";
Biochemistry 29:10628-10634(1990).
[7]
PARTIAL PROTEIN SEQUENCE.
PubMed=2169256 [NCBI, ExPASy, EBI, Israel, Japan]
Knaeuper V., Kraemer S., Reinke H., Tschesche H.;
"Partial amino acid sequence of human PMN leukocyte procollagenase.";
Biol. Chem. Hoppe-Seyler 371:295-304(1990).
[8]
ERRATUM.
PubMed=2169766 [NCBI, ExPASy, EBI, Israel, Japan]
Knaeuper V., Kraemer S., Reinke H., Tschesche H.;
Biol. Chem. Hoppe-Seyler 371:733-733(1990).
[9]
CYSTEINE-SWITCH MECHANISM.
TISSUE=Neutrophil;
DOI=10.1016/0014-5793(92)81184-N; PubMed=1330697 [NCBI, ExPASy, EBI, Israel, Japan]
Blaeser J., Triebel S., Reinke H., Tschesche H.;
"Formation of a covalent Hg-Cys-bond during mercurial activation of PMNL procollagenase gives evidence of a cysteine-switch mechanism.";
FEBS Lett. 313:59-61(1992).
[10]
X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 100-262.
PubMed=8137810 [NCBI, ExPASy, EBI, Israel, Japan]
Bode W., Reinemer P., Huber R., Klein T., Schnierer S., Tschesche H.;
"The X-ray crystal structure of the catalytic domain of human neutrophil collagenase inhibited by a substrate analogue reveals the essentials for catalysis and specificity.";
EMBO J. 13:1263-1269(1994).
[11]
X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 100-262.
DOI=10.1016/0014-5793(94)80370-6; PubMed=8307185 [NCBI, ExPASy, EBI, Israel, Japan]
Reinemer P., Grams F., Huber R., Kleine T., Schnierer S., Piper M., Tschesche H., Bode W.;
"Structural implications for the role of the N-terminus in the 'superactivation' of collagenases. A crystallographic study.";
FEBS Lett. 338:227-233(1994).
[12]
X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 100-262.
DOI=10.1038/nsb0294-119; PubMed=7656015 [NCBI, ExPASy, EBI, Israel, Japan]
Stams T., Spurlino J.C., Smith D.L., Wahl R.C., Ho T.F., Qoronfleh M.W., Banks T.M., Rubin B.;
"Structure of human neutrophil collagenase reveals large S1' specificity pocket.";
Nat. Struct. Biol. 1:119-123(1994).
[13]
X-RAY CRYSTALLOGRAPHY (1.81 ANGSTROMS) OF 100-262.
PubMed=9249047 [NCBI, ExPASy, EBI, Israel, Japan]
Betz M., Huxley P., Davies S.J., Mushtaq Y., Pieper M., Tschesche H., Bode W., Gomis-Rueth F.-X.;
"1.8-A crystal structure of the catalytic domain of human neutrophil collagenase (matrix metalloproteinase-8) complexed with a peptidomimetic hydroxamate primed-side inhibitor with a distinct selectivity profile.";
Eur. J. Biochem. 247:356-363(1997).
[14]
X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF 105-262.
PubMed=9655333 [NCBI, ExPASy, EBI, Israel, Japan]
Brandstetter H., Engh R.A., von Roedern E.G., Moroder L., Huber R., Bode W., Grams F.;
"Structure of malonic acid-based inhibitors bound to human neutrophil collagenase. A new binding mode explains apparently anomalous data.";
Protein Sci. 7:1303-1309(1998).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
J05556; AAA88021.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
DQ141306; AAZ38714.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC074988; AAH74988.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC074989; AAH74989.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A37073; KCHUN.
RefSeq NP_002415.1; -.
UniGene Hs.161839
3D structure databases
PDB
1A85; X-ray; 2.00 A; A=105-262.[ExPASy / RCSB / EBI]
1A86; X-ray; 2.00 A; A=105-262.[ExPASy / RCSB / EBI]
1BZS; X-ray; 1.70 A; A=99-262.[ExPASy / RCSB / EBI]
1I73; X-ray; 1.40 A; A=100-262.[ExPASy / RCSB / EBI]
1I76; X-ray; 1.20 A; A=100-262.[ExPASy / RCSB / EBI]
1JAN; X-ray; 2.50 A; A=99-262.[ExPASy / RCSB / EBI]
1JAO; X-ray; 2.40 A; A=100-262.[ExPASy / RCSB / EBI]
1JAP; X-ray; 1.82 A; A=100-262.[ExPASy / RCSB / EBI]
1JAQ; X-ray; 2.40 A; A=100-262.[ExPASy / RCSB / EBI]
1JH1; X-ray; 2.70 A; A=105-262.[ExPASy / RCSB / EBI]
1JJ9; X-ray; 2.00 A; A=100-262.[ExPASy / RCSB / EBI]
1KBC; X-ray; 1.80 A; A/B=99-262.[ExPASy / RCSB / EBI]
1MMB; X-ray; 2.10 A; A=100-262.[ExPASy / RCSB / EBI]
1MNC; X-ray; 2.10 A; A=101-263.[ExPASy / RCSB / EBI]
1ZP5; X-ray; 1.80 A; A=100-262.[ExPASy / RCSB / EBI]
1ZS0; X-ray; 1.56 A; A=100-262.[ExPASy / RCSB / EBI]
1ZVX; X-ray; 1.87 A; A=100-262.[ExPASy / RCSB / EBI]
2OY2; X-ray; 1.50 A; A/F=105-262.[ExPASy / RCSB / EBI]
2OY4; X-ray; 1.70 A; A/F=105-262.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1A85; -.
1A86; -.
1BZS; -.
1I73; -.
1I76; -.
1JAN; -.
1JAO; -.
1JAP; -.
1JAQ; -.
1JH1; -.
1JJ9; -.
1KBC; -.
1MMB; -.
1MNC; -.
1ZP5; -.
1ZS0; -.
1ZVX; -.
2OY2; -.
2OY4; -.
ModBase P22894.
Protein family/group databases
MEROPS M10.002; -.
Polymorphism databases
NIEHS-SNPs MMP8.
Organism-specific databases
H-InvDB HIX0036002; -.
HGNC HGNC:7175; MMP8.
GenAtlas MMP8.
MIM 120355; gene. [NCBI / EBI]
PharmGKB PA30888; -.
GeneCards P22894.
Gene expression databases
ArrayExpress P22894; -.
CleanEx HS_MMP8; -.
GermOnline ENSG00000118113; Homo sapiens.
Ontologies
GO
GO:0005615; Cellular component: extracellular space (inferred from direct assay from UniProtKB).
GO:0005578; Cellular component: proteinaceous extracellular matrix (inferred from electronic annotation from InterPro).
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004222; Molecular function: metalloendopeptidase activity (inferred from electronic annotation from InterPro).
GO:0004252; Molecular function: serine-type endopeptidase activity (inferred from direct assay from UniProtKB).
GO:0008270; Molecular function: zinc ion binding (traceable author statement from UniProtKB).
GO:0030574; Biological process: collagen catabolic process (inferred from electronic annotation from UniProtKB-KW).
GO:0006508; Biological process: proteolysis (inferred from direct assay from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR000585; Hemopexin.
IPR001818; Pept_M10A_M12B.
IPR016293; Pept_M10A_matrix.
IPR006025; Pept_M_Zn_BS.
IPR006026; Peptidase_M.
IPR002477; Peptidoglycan-bd-like.
Graphical view of domain structure.
Gene3D G3DSA:2.110.10.10; Hemopexin; 1.
Pfam PF00045; Hemopexin; 4.
PF00413; Peptidase_M10; 1.
PF01471; PG_binding_1; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001191; Peptidase_M10A_matrix; 1.
PRINTS PR00138; MATRIXIN.
SMART SM00120; HX; 4.
SM00235; ZnMc; 1.
SMART graphical view of domain structure.
PROSITE PS00546; CYSTEINE_SWITCH; 1.
PS00024; HEMOPEXIN; 1.
PS00142; ZINC_PROTEASE; 1.
ProtoNet P22894.
Proteomic databases
PeptideAtlas P22894; -.
Genome annotation databases
Ensembl ENSG00000118113; Homo sapiens. [Contig view]
GeneID 4317; -.
KEGG hsa:4317; -.
Phylogenomic databases
HOGENOM P22894; -.
HOVERGEN P22894; -.
Other
LinkHub P22894; -.
NextBio 16985; -.
SOURCE MMP8; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Calcium; Collagen degradation; Direct protein sequencing; Extracellular matrix; Glycoprotein; Hydrolase; Metal-binding; Metalloprotease; Polymorphism; Protease; Repeat; Secreted; Signal; Zinc; Zymogen.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    20  20      
PROPEP   21   100  80     Activation peptide. PRO_0000028744
CHAIN   101   467  367     Neutrophil collagenase. PRO_0000028745
DOMAIN   285   327  43     Hemopexin-like 1. 
DOMAIN   329   372  44     Hemopexin-like 2. 
DOMAIN   377   422  46     Hemopexin-like 3. 
DOMAIN   424   464  41     Hemopexin-like 4. 
MOTIF   89    96  8     Cysteine switch (By similarity). 
ACT_SITE   218   218         
METAL   91    91        Zinc 2; in inhibited form. 
METAL   157   157        Calcium 1. 
METAL   167   167        Zinc 1. 
METAL   169   169        Zinc 1. 
METAL   174   174        Calcium 2. 
METAL   175   175        Calcium 2; via carbonyl oxygen. 
METAL   177   177        Calcium 2; via carbonyl oxygen. 
METAL   179   179        Calcium 2; via carbonyl oxygen. 
METAL   182   182        Zinc 1. 
METAL   189   189        Calcium 1; via carbonyl oxygen. 
METAL   191   191        Calcium 1; via carbonyl oxygen. 
METAL   193   193        Calcium 1. 
METAL   195   195        Zinc 1. 
METAL   197   197        Calcium 2. 
METAL   200   200        Calcium 2. 
METAL   217   217        Zinc 2; catalytic. 
METAL   221   221        Zinc 2; catalytic. 
METAL   227   227        Zinc 2; catalytic. 
METAL   286   286        Calcium 3; via carbonyl oxygen (By similarity). 
METAL   378   378        Calcium 3; via carbonyl oxygen (By similarity). 
METAL   425   425        Calcium 3; via carbonyl oxygen (By similarity). 
CARBOHYD   54    54        N-linked (GlcNAc...) (Probable). 
CARBOHYD   73    73        N-linked (GlcNAc...) (Probable). 
CARBOHYD   112   112        N-linked (GlcNAc...). 
CARBOHYD   204   204        N-linked (GlcNAc...) (Potential). 
CARBOHYD   246   246        N-linked (GlcNAc...) (Potential). 
DISULFID   279   464        Probable. 
VARIANT   3     3  1     S -> C (in dbSNP:rs17099450 [NCBI]). VAR_025036 
VARIANT   32    32  1     T -> I. VAR_025037 
VARIANT   87    87  1     K -> E (in dbSNP:rs1940475 [NCBI]). VAR_006730 
VARIANT   154   154  1     G -> E. VAR_025038 [3D]
VARIANT   193   193  1     D -> V. VAR_025039 [3D]
VARIANT   246   246  1     N -> Y. VAR_025040 [3D]
VARIANT   436   436  1     V -> A. VAR_025041 
VARIANT   460   460  1     K -> T. VAR_025042 
CONFLICT   40    40        F -> I (in Ref. 4; AA sequence). 
CONFLICT   48    48        Y -> V (in Ref. 4; AA sequence). 
STRAND   111   117  7      
HELIX   126   141  16      
STRAND   147   150  4      
STRAND   152   154  3      
STRAND   157   163  7      
STRAND   168   170  3      
STRAND   175   178  4      
STRAND   181   183  3      
TURN   189   192  4      
STRAND   194   197  4      
STRAND   203   208  6      
HELIX   211   223  13      
STRAND   236   238  3      
HELIX   251   261  11      
Sequence information
Length: 467 AA [This is the length of the unprocessed precursor] Molecular weight: 53412 Da [This is the MW of the unprocessed precursor] CRC64: 4D4602A53AD7F8BC [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFSLKTLPFL LLLHVQISKA FPVSSKEKNT KTVQDYLEKF YQLPSNQYQS TRKNGTNVIV 

        70         80         90        100        110        120 
EKLKEMQRFF GLNVTGKPNE ETLDMMKKPR CGVPDSGGFM LTPGNPKWER TNLTYRIRNY 

       130        140        150        160        170        180 
TPQLSEAEVE RAIKDAFELW SVASPLIFTR ISQGEADINI AFYQRDHGDN SPFDGPNGIL 

       190        200        210        220        230        240 
AHAFQPGQGI GGDAHFDAEE TWTNTSANYN LFLVAAHEFG HSLGLAHSSD PGALMYPNYA 

       250        260        270        280        290        300 
FRETSNYSLP QDDIDGIQAI YGLSSNPIQP TGPSTPKPCD PSLTFDAITT LRGEILFFKD 

       310        320        330        340        350        360 
RYFWRRHPQL QRVEMNFISL FWPSLPTGIQ AAYEDFDRDL IFLFKGNQYW ALSGYDILQG 

       370        380        390        400        410        420 
YPKDISNYGF PSSVQAIDAA VFYRSKTYFF VNDQFWRYDN QRQFMEPGYP KSISGAFPGI 

       430        440        450        460 
ESKVDAVFQQ EHFFHVFSGP RYYAFDLIAQ RVTRVARGNK WLNCRYG 

P22894 in FASTA format

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