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UniProtKB/Swiss-Prot entry P21643


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name T23O_RAT
Primary accession number P21643
Secondary accession numbers Q5EBC2 Q6LBW3
Integrated into Swiss-Prot on May 1, 1991
Sequence was last modified on May 1, 1991 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 57)
Name and origin of the protein
Protein name Tryptophan 2,3-dioxygenase
Synonyms TO
EC 1.13.11.11
Tryptophan pyrrolase
Tryptophanase
Tryptophan oxygenase
Tryptamin 2,3-dioxygenase
TRPO
Gene name
Name: Tdo2
Synonyms: Tdo
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Liver;
DOI=10.1016/0006-291X(90)91256-R; PubMed=2372286 [NCBI, ExPASy, EBI, Israel, Japan]
Maezono K., Tashiro K., Nakamura T.;
"Deduced primary structure of rat tryptophan-2,3-dioxygenase.";
Biochem. Biophys. Res. Commun. 170:176-181(1990).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Liver;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-12, AND INDUCTION.
PubMed=3582368 [NCBI, ExPASy, EBI, Israel, Japan]
Danesch U., Gloss B., Schmid W., Schuetz G., Schuele R., Renkawitz R.;
"Glucocorticoid induction of the rat tryptophan oxygenase gene is mediated by two widely separated glucocorticoid-responsive elements.";
EMBO J. 6:625-630(1987).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-12.
TISSUE=Liver;
PubMed=6327261 [NCBI, ExPASy, EBI, Israel, Japan]
Schmid W., Scherer G., Danesch U., Zentgraf H., Matthias P., Strange C.M., Roewekamp W.G., Schuetz G.;
"Isolation and characterization of the rat tryptophan oxygenase gene.";
EMBO J. 1:1287-1293(1982).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 102-242.
DOI=10.1016/0167-4781(92)90062-5; PubMed=1511007 [NCBI, ExPASy, EBI, Israel, Japan]
Merkulov V.M., Merkulova T.I.;
"Nucleotide sequence of a fragment of the rat tryptophan oxygenase gene showing high affinity to glucocorticoid receptor in vitro.";
Biochim. Biophys. Acta 1132:100-102(1992).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M55167; AAA63503.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC089802; AAH89802.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X05145; CAA28794.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X01849; CAA25974.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X60833; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
PIR A35484; A35484.
RefSeq NP_071798.1; -.
UniGene Rn.1029
3D structure databases
ModBase P21643.
Organism-specific databases
RGD 68370; Tdo2.
Gene expression databases
ArrayExpress P21643; -.
GermOnline ENSRNOG00000011612; Rattus norvegicus.
Ontologies
GO
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0004833; Molecular function: tryptophan 2,3-dioxygenase activity (inferred from electronic annotation from InterPro).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from InterPro).
GO:0019441; Biological process: tryptophan catabolic process to kynurenine (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR004981; Trp_2_3_dOase.
Graphical view of domain structure.
PANTHER PTHR10138; Trp_2_3_dOase; 1.
Pfam PF03301; Trp_dioxygenase; 1.
Pfam graphical view of domain structure.
ProtoNet P21643.
Genome annotation databases
Ensembl ENSRNOG00000011612; Rattus norvegicus. [Contig view]
GeneID 64206; -.
KEGG rno:64206; -.
NMPDR fig|10116.3.peg.16250; -.
Phylogenomic databases
HOVERGEN P21643; -.
Other
NextBio 612914; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Dioxygenase; Heme; Iron; Metal-binding; Oxidoreductase; Phosphoprotein.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   406  406     Tryptophan 2,3-dioxygenase. PRO_0000072401
MOD_RES   19    19        Phosphoserine (By similarity). 
MOD_RES   155   155        Phosphoserine (By similarity). 
CONFLICT   207   207        Missing (in Ref. 5). 
Sequence information
Length: 406 AA [This is the length of the unprocessed precursor] Molecular weight: 47857 Da [This is the MW of the unprocessed precursor] CRC64: 9C45973BEE3BF93A [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSGCPFSGNS VGYTLKNLSM EDNEEDGAQT GVNRASKGGL IYGDYLQLEK ILNAQELQSE 

        70         80         90        100        110        120 
IKGNKIHDEH LFIITHQAYE LWFKQILWEL DSVREIFQNG HVRDERNMLK VMTRMHRVVV 

       130        140        150        160        170        180 
IFKLLVQQFS VLETMTALDF NDFREYLSPA SGFQSLQFRL LENKIGVLQS LRVPYNRKHY 

       190        200        210        220        230        240 
RDNFEGDYNE LLLKSEQEQT LLQLVEAWLE RTPGLEPHGF NFWGKFEKNI LKGLEEEFLK 

       250        260        270        280        290        300 
IQAKKDSEEK EEQMAEFRKQ KEVLLCLFDE KRHDYLLSKG ERRLSYRALQ GALMIYFYRE 

       310        320        330        340        350        360 
EPRFQVPFQL LTSLMDIDTL MTKWRYNHVC MVHRMLGSKA GTGGSSGYYY LRSTVSDRYK 

       370        380        390        400 
VFVDLFNLSS YLVPRHWIPK MNPIIHKFLY TAEYSDSSYF SSDESD 

P21643 in FASTA format

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View entry in raw text format (no links)
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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