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UniProtKB/Swiss-Prot entry P19013


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name K2C4_HUMAN
Primary accession number P19013
Secondary accession numbers Q6GTR8 Q96LA7 Q9BTL1
Integrated into Swiss-Prot on November 1, 1990
Sequence was last modified on November 22, 2005 (Sequence version 4)
Annotations were last modified on    June 16, 2009 (Entry version 94)
Name and origin of the protein
Protein name Keratin, type II cytoskeletal 4
Synonyms Cytokeratin-4
CK-4
Keratin-4
K4
Gene name
Name: KRT4
Synonyms: CYK4
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Cassidy A.J., Morley S.M., McLean W.H.I.;
"A mutation detection strategy for oral mucosal keratins K4, K13, and K2p in white sponge nevus.";
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain, and Ovary;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-144, AND VARIANTS VAL-72 AND 83-GLY--THR-96 DEL.
DOI=10.1111/1523-1747.ep12475671; PubMed=7684424 [NCBI, ExPASy, EBI, Israel, Japan]
Wanner R., Foerster H.-H., Tilmans I., Mischke D.;
"Allelic variations of human keratins K4 and K5 provide polymorphic markers within the type II keratin gene cluster on chromosome 12.";
J. Invest. Dermatol. 100:735-741(1993).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 127-534, AND TISSUE SPECIFICITY.
DOI=10.1083/jcb.106.4.1249; PubMed=2452170 [NCBI, ExPASy, EBI, Israel, Japan]
Leube R.E., Bader B.L., Bosch F.X., Zimbelmann R., Achtstaetter T., Franke W.W.;
"Molecular characterization and expression of the stratification-related cytokeratins 4 and 15.";
J. Cell Biol. 106:1249-1261(1988).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 411-534.
Wanner R., Tilmans I., Mischke D.;
Submitted (JUL-1991) to the EMBL/GenBank/DDBJ databases.
[6]
IDENTIFICATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
Colinge J., Superti-Furga G., Bennett K.L.;
Submitted (OCT-2008) to UniProtKB.
[7]
VARIANT WSN GLN-153 INS.
DOI=10.1046/j.1523-1747.2000.00890.x; PubMed=10652003 [NCBI, ExPASy, EBI, Israel, Japan]
Terrinoni A., Candi E., Oddi S., Gobello T., Camaione D.B., Mazzanti C., Zambruno G., Knight R., Melino G.;
"A glutamine insertion in the 1A alpha helical domain of the keratin 4 gene in a familial case of white sponge nevus.";
J. Invest. Dermatol. 114:388-391(2000).
[8]
VARIANT WSN LYS-449.
DOI=10.1046/j.1365-2133.2003.05337.x; PubMed=12828738 [NCBI, ExPASy, EBI, Israel, Japan]
Chao S.C., Tsai Y.M., Yang M.H., Lee Jy J.Y.;
"A novel mutation in the keratin 4 gene causing white sponge naevus.";
Br. J. Dermatol. 148:1125-1128(2003).
Comments
  • SUBUNIT: Heterotetramer of two type I and two type II keratins. Keratin-4 is generally associated with keratin-13.
  • TISSUE SPECIFICITY: Detected in the suprabasal layer of the stratified epithelium of the esophagus, exocervix, vagina, mouth and lingual mucosa, and in cells and cell clusters in the mucosa and serous gland ducts of the esophageal submucosa (at protein level). Expressed widely in the exocervix and esophageal epithelium, with lowest levels detected in the basal cell layer.
  • POLYMORPHISM: Three alleles of K4 are known: K4A2 (shown here), K4A1 and K4B.
  • DISEASE: Defects in KRT4 are a cause of white sponge nevus of cannon (WSN) [MIM:193900]. WSN is a rare autosomal dominant disorder which predominantly affects non-cornified stratified squamous epithelia. Clinically, it is characterized by the presence of soft, white, and spongy plaques in the oral mucosa. The characteristic histopathologic features are epithelial thickening, parakeratosis, and vacuolization of the suprabasal layer of oral epithelial keratinocytes. Less frequently the mucous membranes of the nose, esophagus, genitalia and rectum are involved.
  • MISCELLANEOUS: There are two types of cytoskeletal and microfibrillar keratin: I (acidic; 40-55 kDa) and II (neutral to basic; 56-70 kDa).
  • SIMILARITY: Belongs to the intermediate filament family.
  • WEB RESOURCE: Name=Human Intermediate Filament Mutation Database; URL="http://www.interfil.org";.
  • WEB RESOURCE: Name=GeneReviews; URL="http://www.genetests.org/query?gene=KRT4";.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AY043326; AAL14196.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC003630; AAH03630.2; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC042174; AAH42174.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X67683; CAA47914.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X07695; CAA30534.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X61028; CAA43362.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00290078; -.
PIR I37942; I37942.
RefSeq NP_002263.2; -.
UniGene Hs.654610
3D structure databases
HSSP P08670; 1GK7. [HSSP ENTRY / PDB]
ModBase P19013.
PTM databases
PhosphoSite P19013; -.
Organism-specific databases
GeneCards GC12M051486; -.
H-InvDB HIX0010659; -.
HGNC HGNC:6441; KRT4.
GenAtlas KRT4.
MIM 123940; gene. [NCBI / EBI]
193900; phenotype. [NCBI / EBI]
PharmGKB PA30229; -.
Gene expression databases
ArrayExpress P19013; -.
Bgee P19013; -.
CleanEx HS_KRT4; -.
GermOnline ENSG00000170477; Homo sapiens.
Ontologies
GO
GO:0045095; Cellular component: keratin filament (inferred from electronic annotation from InterPro).
GO:0005198; Molecular function: structural molecule activity (non-traceable author statement from UniProtKB).
GO:0007010; Biological process: cytoskeleton organization (non-traceable author statement from UniProtKB).
GO:0030855; Biological process: epithelial cell differentiation (inferred from sequence or structural similarity from UniProtKB).
GO:0050680; Biological process: negative regulation of epithelial cell proliferation (inferred from sequence or structural similarity from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR016044; F.
IPR001664; IF.
IPR018039; Intermediate_filament_CS.
IPR003054; Keratin_II.
Graphical view of domain structure.
PANTHER PTHR23239; IF; 1.
PTHR23239:SF18; Keratin_II; 1.
Pfam PF00038; Filament; 1.
Pfam graphical view of domain structure.
PRINTS PR01276; TYPE2KERATIN.
PROSITE PS00226; IF; 1.
Genome annotation databases
Ensembl ENSG00000170477; Homo sapiens. [Contig view]
GeneID 3851; -.
KEGG hsa:3851; -.
Phylogenomic databases
HOGENOM P19013; -.
HOVERGEN P19013; -.
Other
NextBio 15153; -.
SOURCE KRT4; Homo sapiens.
ProtoNet P19013.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Coiled coil; Disease mutation; Intermediate filament; Keratin; Phosphoprotein; Polymorphism.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   534  534     Keratin, type II cytoskeletal 4. PRO_0000063722
REGION   1   150  150     Head. 
REGION   151   461  311     Rod. 
REGION   151   186  36     Coil 1A. 
REGION   187   205  19     Linker 1. 
REGION   206   298  93     Coil 1B. 
REGION   299   321  23     Linker 12. 
REGION   322   461  140     Coil 2. 
REGION   462   534  73     Tail. 
COMPBIAS   10   122  113     Gly-rich. 
COMPBIAS   470   526  57     Ser-rich. 
SITE   402   402  1     Stutter. 
MOD_RES   51    51        Phosphoserine (By similarity). 
VARIANT   72    72  1     A -> V (in allele K4A1). VAR_003869 
VARIANT   83    96  14     Missing (in allele K4B). VAR_003870
VARIANT   153   153  1     E -> EQ (in WSN). VAR_012845
VARIANT   449   449  1     E -> K (in WSN). VAR_016038 [3D]
CONFLICT   118   118        C -> L (in Ref. 3; CAA47914). 
CONFLICT   127   128        TI -> SL (in Ref. 4; CAA30534). 
CONFLICT   236   236        D -> Y (in Ref. 2; AAH03630). 
Sequence information
Length: 534 AA [This is the length of the unprocessed precursor] Molecular weight: 57285 Da [This is the MW of the unprocessed precursor] CRC64: 3795B7C93092F97E [This is a checksum on the sequence]
        10         20         30         40         50         60 
MIARQQCVRG GPRGFSCGSA IVGGGKRGAF SSVSMSGGAG RCSSGGFGSR SLYNLRGNKS 

        70         80         90        100        110        120 
ISMSVAGSRQ GACFGGAGGF GTGGFGAGGF GAGFGTGGFG GGFGGSFSGK GGPGFPVCPA 

       130        140        150        160        170        180 
GGIQEVTINQ SLLTPLHVEI DPEIQKVRTE EREQIKLLNN KFASFIDKVQ FLEQQNKVLE 

       190        200        210        220        230        240 
TKWNLLQQQT TTTSSKNLEP LFETYLSVLR KQLDTLGNDK GRLQSELKTM QDSVEDFKTK 

       250        260        270        280        290        300 
YEEEINKRTA AENDFVVLKK DVDAAYLNKV ELEAKVDSLN DEINFLKVLY DAELSQMQTH 

       310        320        330        340        350        360 
VSDTSVVLSM DNNRNLDLDS IIAEVRAQYE EIAQRSKAEA EALYQTKVQQ LQISVDQHGD 

       370        380        390        400        410        420 
NLKNTKSEIA ELNRMIQRLR AEIENIKKQC QTLQVSVADA EQRGENALKD AHSKRVELEA 

       430        440        450        460        470        480 
ALQQAKEELA RMLREYQELM SVKLALDIEI ATYRKLLEGE EYRMSGECQS AVSISVVSGS 

       490        500        510        520        530 
TSTGGISGGL GSGSGFGLSS GFGSGSGSGF GFGGSVSGSS SSKIISTTTL NKRR 

P19013 in FASTA format

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