[1]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 181-196; 815-820; 826-836; 862-879; 925-936 AND 1004-1013, AND SUBUNIT.
STRAIN=ATCC 26786 / X2180-1A;
PubMed=2139027 [NCBI, ExPASy, EBI, Israel, Japan]
Hirata R.,
Ohsumi Y.,
Nakano A.,
Kawasaki H.,
Suzuki K.,
Anraku Y.;
"Molecular structure of a gene, VMA1, encoding the catalytic subunit of H(+)-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae.";
J. Biol. Chem. 265:6726-6733(1990).
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[2]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=ATCC 96604 / S288c / FY1679;
DOI=10.1002/yea.320111007; PubMed=8533471 [NCBI, ExPASy, EBI, Israel, Japan]
Verhasselt P.,
Voet M.,
Volckaert G.;
"New open reading frames, one of which is similar to the nifV gene of Azotobacter vinelandii, found on a 12.5 kbp fragment of chromosome IV of Saccharomyces cerevisiae.";
Yeast 11:961-966(1995).
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[3]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 96604 / S288c / FY1679;
PubMed=9169867 [NCBI, ExPASy, EBI, Israel, Japan]
Jacq C.,
Alt-Moerbe J.,
Andre B.,
Arnold W.,
Bahr A.,
Ballesta J.P.G.,
Bargues M.,
Baron L.,
Becker A.,
Biteau N.,
Bloecker H.,
Blugeon C.,
Boskovic J.,
Brandt P.,
Brueckner M.,
Buitrago M.J.,
Coster F.,
Delaveau T.,
del Rey F.,
Dujon B.,
Eide L.G.,
Garcia-Cantalejo J.M.,
Goffeau A.,
Gomez-Peris A.,
Granotier C.,
Hanemann V.,
Hankeln T.,
Hoheisel J.D.,
Jaeger W.,
Jimenez A.,
Jonniaux J.-L.,
Kraemer C.,
Kuester H.,
Laamanen P.,
Legros Y.,
Louis E.J.,
Moeller-Rieker S.,
Monnet A.,
Moro M.,
Mueller-Auer S.,
Nussbaumer B.,
Paricio N.,
Paulin L.,
Perea J.,
Perez-Alonso M.,
Perez-Ortin J.E.,
Pohl T.M.,
Prydz H.,
Purnelle B.,
Rasmussen S.W.,
Remacha M.A.,
Revuelta J.L.,
Rieger M.,
Salom D.,
Saluz H.P.,
Saiz J.E.,
Saren A.-M.,
Schaefer M.,
Scharfe M.,
Schmidt E.R.,
Schneider C.,
Scholler P.,
Schwarz S.,
Soler-Mira A.,
Urrestarazu L.A.,
Verhasselt P.,
Vissers S.,
Voet M.,
Volckaert G.,
Wagner G.,
Wambutt R.,
Wedler E.,
Wedler H.,
Woelfl S.,
Harris D.E.,
Bowman S.,
Brown D.,
Churcher C.M.,
Connor R.,
Dedman K.,
Gentles S.,
Hamlin N.,
Hunt S.,
Jones L.,
McDonald S.,
Murphy L.D.,
Niblett D.,
Odell C.,
Oliver K.,
Rajandream M.A.,
Richards C.,
Shore L.,
Walsh S.V.,
Barrell B.G.,
Dietrich F.S.,
Mulligan J.T.,
Allen E.,
Araujo R.,
Aviles E.,
Berno A.,
Carpenter J.,
Chen E.,
Cherry J.M.,
Chung E.,
Duncan M.,
Hunicke-Smith S.,
Hyman R.W.,
Komp C.,
Lashkari D.,
Lew H.,
Lin D.,
Mosedale D.,
Nakahara K.,
Namath A.,
Oefner P.,
Oh C.,
Petel F.X.,
Roberts D.,
Schramm S.,
Schroeder M.,
Shogren T.,
Shroff N.,
Winant A.,
Yelton M.A.,
Botstein D.,
Davis R.W.,
Johnston M.,
Andrews S.,
Brinkman R.,
Cooper J.,
Ding H.,
Du Z.,
Favello A.,
Fulton L.,
Gattung S.,
Greco T.,
Hallsworth K.,
Hawkins J.,
Hillier L.W.,
Jier M.,
Johnson D.,
Johnston L.,
Kirsten J.,
Kucaba T.,
Langston Y.,
Latreille P.,
Le T.,
Mardis E.,
Menezes S.,
Miller N.,
Nhan M.,
Pauley A.,
Peluso D.,
Rifkin L.,
Riles L.,
Taich A.,
Trevaskis E.,
Vignati D.,
Wilcox L.,
Wohldman P.,
Vaudin M.,
Wilson R.,
Waterston R.,
Albermann K.,
Hani J.,
Heumann K.,
Kleine K.,
Mewes H.-W.,
Zollner A.,
Zaccaria P.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.";
Nature 387:75-78(1997).
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[4]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-34.
STRAIN=ATCC 208353 / W303-1A;
PubMed=1656215 [NCBI, ExPASy, EBI, Israel, Japan]
Ronne H.,
Carlberg M.,
Hu G.-Z.,
Nehlin J.O.;
"Protein phosphatase 2A in Saccharomyces cerevisiae: effects on cell growth and bud morphogenesis.";
Mol. Cell. Biol. 11:4876-4884(1991).
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[5]
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PROTEIN SEQUENCE OF 2-10; 52-63; 115-136; 173-178; 181-207; 220-239; 264-272; 770-784; 804-814; 826-842; 853-861; 918-937; 940-959; 1004-1014 AND 1058-1065, CLEAVAGE OF INITIATOR METHIONINE, ACETYLATION AT ALA-2, AND MASS SPECTROMETRY.
Bienvenut W.V.,
Peters C.;
Submitted (OCT-2005) to UniProtKB.
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[6]
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PROTEIN SEQUENCE OF 2-6, CLEAVAGE OF INITIATOR METHIONINE, MUTAGENESIS OF CYS-284; HIS-362; ASN-737 AND CYS-738, AND X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 274-747.
DOI=10.1006/jmbi.2001.5357; PubMed=11884132 [NCBI, ExPASy, EBI, Israel, Japan]
Mizutani R.,
Nogami S.,
Kawasaki M.,
Ohya Y.,
Anraku Y.,
Satow Y.;
"Protein-splicing reaction via a thiazolidine intermediate: crystal structure of the VMA1-derived endonuclease bearing the N and C-terminal propeptides.";
J. Mol. Biol. 316:919-929(2002).
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[7]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 41-1071.
PubMed=2905423 [NCBI, ExPASy, EBI, Israel, Japan]
Shih C.K.,
Wagner R.,
Feinstein S.,
Kanik-Ennulat C.,
Neff N.;
"A dominant trifluoperazine resistance gene from Saccharomyces cerevisiae has homology with F0F1 ATP synthase and confers calcium-sensitive growth.";
Mol. Cell. Biol. 8:3094-3103(1988).
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[8]
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PROTEIN SPLICING.
DOI=10.1126/science.2146742; PubMed=2146742 [NCBI, ExPASy, EBI, Israel, Japan]
Kane P.M.,
Yamashiro C.T.,
Wolczyk D.F.,
Neff N.,
Goebl M.,
Stevens T.H.;
"Protein splicing converts the yeast TFP1 gene product to the 69-kD subunit of the vacuolar H(+)-adenosine triphosphatase.";
Science 250:651-657(1990).
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[9]
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MUTAGENESIS OF CYS-284 AND CYS-738.
DOI=10.1016/0006-291X(92)92347-Z; PubMed=1417861 [NCBI, ExPASy, EBI, Israel, Japan]
Hirata R.,
Anraku Y.;
"Mutations at the putative junction sites of the yeast VMA1 protein, the catalytic subunit of the vacuolar membrane H(+)-ATPase, inhibit its processing by protein splicing.";
Biochem. Biophys. Res. Commun. 188:40-47(1992).
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[10]
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SELF-SPLICING MECHANISM.
PubMed=8508780 [NCBI, ExPASy, EBI, Israel, Japan]
Cooper A.A.,
Chen Y.-J.,
Lindorfer M.A.,
Stevens T.H.;
"Protein splicing of the yeast TFP1 intervening protein sequence: a model for self-excision.";
EMBO J. 12:2575-2583(1993).
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[11]
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FUNCTION OF VDE.
DOI=10.1038/357301a0; PubMed=1534148 [NCBI, ExPASy, EBI, Israel, Japan]
Gimble F.S.,
Thorner J.;
"Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae.";
Nature 357:301-306(1992).
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[12]
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INTERACTION WITH RAV1 AND RAV2.
DOI=10.1038/35070067; PubMed=11283612 [NCBI, ExPASy, EBI, Israel, Japan]
Seol J.H.,
Shevchenko A.,
Shevchenko A.,
Deshaies R.J.;
"Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly.";
Nat. Cell Biol. 3:384-391(2001).
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[13]
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SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
DOI=10.1038/nature02026; PubMed=14562095 [NCBI, ExPASy, EBI, Israel, Japan]
Huh W.-K.,
Falvo J.V.,
Gerke L.C.,
Carroll A.S.,
Howson R.W.,
Weissman J.S.,
O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
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[14]
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LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
DOI=10.1038/nature02046; PubMed=14562106 [NCBI, ExPASy, EBI, Israel, Japan]
Ghaemmaghami S.,
Huh W.-K.,
Bower K.,
Howson R.W.,
Belle A.,
Dephoure N.,
O'Shea E.K.,
Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
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[15]
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REVIEW.
DOI=10.1016/0960-9822(92)90336-9; PubMed=15335920 [NCBI, ExPASy, EBI, Israel, Japan]
Grivell L.A.;
"Homing in on an endosymbiotic endonuclease.";
Curr. Biol. 2:450-452(1992).
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[16]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-131, AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M400219-MCP200; PubMed=15665377 [NCBI, ExPASy, EBI, Israel, Japan]
Gruhler A.,
Olsen J.V.,
Mohammed S.,
Mortensen P.,
Faergeman N.J.,
Mann M.,
Jensen O.N.;
"Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.";
Mol. Cell. Proteomics 4:310-327(2005).
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[17]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-166 AND SER-376, AND MASS SPECTROMETRY.
DOI=10.1073/pnas.0607084104; PubMed=17287358 [NCBI, ExPASy, EBI, Israel, Japan]
Chi A.,
Huttenhower C.,
Geer L.Y.,
Coon J.J.,
Syka J.E.P.,
Bai D.L.,
Shabanowitz J.,
Burke D.J.,
Troyanskaya O.G.,
Hunt D.F.;
"Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.";
Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007).
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[18]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-16; THR-131; SER-448; THR-771; SER-777; SER-845; SER-858 AND SER-928, AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M700468-MCP200; PubMed=18407956 [NCBI, ExPASy, EBI, Israel, Japan]
Albuquerque C.P.,
Smolka M.B.,
Payne S.H.,
Bafna V.,
Eng J.,
Zhou H.;
"A multidimensional chromatography technology for in-depth phosphoproteome analysis.";
Mol. Cell. Proteomics 7:1389-1396(2008).
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[19]
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X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) OF PI-SCE I.
DOI=10.1016/S0092-8674(00)80237-8; PubMed=9160747 [NCBI, ExPASy, EBI, Israel, Japan]
Duan X.,
Gimble F.S.,
Quiocho F.A.;
"Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity.";
Cell 89:555-564(1997).
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[20]
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X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) OF PI-SCE I.
DOI=10.1074/jbc.275.4.2705; PubMed=10644733 [NCBI, ExPASy, EBI, Israel, Japan]
Hu D.,
Crist M.,
Duan X.,
Quiocho F.A.,
Gimble F.S.;
"Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking.";
J. Biol. Chem. 275:2705-2712(2000).
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[21]
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X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 283-741, AND MUTAGENESIS OF CYS-284 AND ASN-737.
DOI=10.1074/jbc.275.22.16408; PubMed=10828056 [NCBI, ExPASy, EBI, Israel, Japan]
Poland B.W.,
Xu M.-Q.,
Quiocho F.A.;
"Structural insights into the protein splicing mechanism of PI-SceI.";
J. Biol. Chem. 275:16408-16413(2000).
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[22]
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X-RAY CRYSTALLOGRAPHY (1.35 ANGSTROMS) OF 284-465.
DOI=10.1093/nar/gkf523; PubMed=12235380 [NCBI, ExPASy, EBI, Israel, Japan]
Werner E.,
Wende W.,
Pingoud A.,
Heinemann U.;
"High resolution crystal structure of domain I of the Saccharomyces cerevisiae homing endonuclease PI-SceI.";
Nucleic Acids Res. 30:3962-3971(2002).
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