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UniProtKB/Swiss-Prot entry P14420


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PA21B_VIPAE
Primary accession number P14420
Secondary accession numbers None
Integrated into Swiss-Prot on January 1, 1990
Sequence was last modified on January 1, 1990 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 72)
Name and origin of the protein
Protein name Phospholipase A2
Synonyms EC 3.1.1.4
Phosphatidylcholine 2-acylhydrolase
Vipoxin non-toxic component
Vipoxin B chain
Gene name None
From
Vipera ammodytes meridionalis (Eastern sand viper) [TaxID: 73841] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Scleroglossa; Serpentes; Colubroidea; Viperidae; Viperinae; Vipera.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE.
STRAIN=Bulgarian;
TISSUE=Venom;
PubMed=3606821 [NCBI, ExPASy, EBI, Israel, Japan]
Mancheva I., Kleinschmidt T., Aleksiev B., Braunitzer G.;
"Sequence homology between phospholipase and its inhibitor in snake venom. The primary structure of phospholipase A2 of vipoxin from the venom of the Bulgarian viper (Vipera ammodytes ammodytes, Serpentes).";
Biol. Chem. Hoppe-Seyler 368:343-352(1987).
[2]
CRYSTALLIZATION.
TISSUE=Venom;
DOI=10.1006/jmbi.1993.1109; PubMed=8445639 [NCBI, ExPASy, EBI, Israel, Japan]
Devedjiev Y., Atanasov B., Mancheva I., Aleksiev B.;
"Crystals of phospholipase A2 inhibitor. The non-toxic component of vipoxin from the venom of Bulgarian viper (Vipera ammodytes).";
J. Mol. Biol. 229:1147-1149(1993).
[3]
X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS).
TISSUE=Venom;
DOI=10.1006/jmbi.1993.1297; PubMed=8510159 [NCBI, ExPASy, EBI, Israel, Japan]
Betzel C., Visanji M., Wilson K.S., Genov N., Mancheva I., Aleksiev B., Singh T.P.;
"Crystallization and preliminary X-ray analysis of vipoxin, a complex between a toxic phospholipase A2 and its natural polypeptide inhibitor.";
J. Mol. Biol. 231:498-500(1993).
[4]
X-RAY CRYSTALLOGRAPHY (2 ANGSTROMS).
DOI=10.1016/S0014-5793(97)00853-3; PubMed=9276469 [NCBI, ExPASy, EBI, Israel, Japan]
Perbandt M., Wilson J.C., Eschenburg S., Mancheva I., Aleksiev B., Genov N., Willingmann P., Weber W., Singh T.P., Betzel C.;
"Crystal structure of vipoxin at 2.0 A: an example of regulation of a toxic function generated by molecular evolution.";
FEBS Lett. 412:573-577(1997).
[5]
X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS).
DOI=10.1107/S0907444901013543; PubMed=11679719 [NCBI, ExPASy, EBI, Israel, Japan]
Banumathi S., Rajashankar K.R., Notzel C., Aleksiev B., Singh T.P., Genov N., Betzel C.;
"Structure of the neurotoxic complex vipoxin at 1.4 A resolution.";
Acta Crystallogr. D 57:1552-1559(2001).
Comments
  • FUNCTION: PA2 catalyzes the calcium-dependent hydrolysis of the 2-acyl groups in 3-sn-phosphoglycerides.
  • FUNCTION: The vipoxin complex show postsynaptic neurotoxicity, while the isolated phospholipase A2 is a presynaptic neurotoxin.
  • CATALYTIC ACTIVITY: Phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate.
  • COFACTOR: Binds 1 calcium ion per subunit (By similarity).
  • SUBUNIT: The main toxin of this snake venom is vipoxin, a complex of a toxic basic protein (B chain) having phospholipase A2 activity and a nontoxic acidic protein (A chain) functioning as its inhibitor. Without the inhibitor, the basic protein becomes unstable and within 12-14 days loses its enzymatic activity.
  • SUBCELLULAR LOCATION: Secreted.
  • TISSUE SPECIFICITY: Expressed by the venom gland.
  • MISCELLANEOUS: The supposed calcium binding region close to Asp-48 of the basic phospholipase A2 is blocked by the side chain of Lys-60 of its inhibitor.
  • SIMILARITY: Belongs to the phospholipase A2 family. Group II subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
PIR A29290; A29290.
3D structure databases
PDB
1AOK; X-ray; 2.00 A; B=1-122.[ExPASy / RCSB / EBI]
1JLT; X-ray; 1.40 A; B=1-122.[ExPASy / RCSB / EBI]
1RGB; X-ray; 3.30 A; A/B/K/L=1-122.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1AOK; -.
1JLT; -.
1RGB; -.
ModBase P14420.
Family and domain databases
InterPro IPR016090; Phospholipase_A2.
IPR013090; Phospholipase_A2_AS.
IPR001211; Phospholipase_A2_euk.
Graphical view of domain structure.
Gene3D G3DSA:1.20.90.10; Phospholipase_A2; 1.
PANTHER PTHR11716; Phospholipase_A2; 1.
Pfam PF00068; Phospholip_A2_1; 1.
Pfam graphical view of domain structure.
PRINTS PR00389; PHPHLIPASEA2.
ProDom PD000303; PhospholipaseA2; 1.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00085; PA2c; 1.
SMART graphical view of domain structure.
PROSITE PS00119; PA2_ASP; 1.
PS00118; PA2_HIS; 1.
BLOCKS P14420.
Phylogenomic databases
HOVERGEN P14420; -.
Other
LinkHub P14420; -.
ProtoNet P14420.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Calcium; Direct protein sequencing; Hydrolase; Lipid degradation; Metal-binding; Neurotoxin; Postsynaptic neurotoxin; Presynaptic neurotoxin; Secreted; Toxin.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   122  122     Phospholipase A2. PRO_0000161712
ACT_SITE   47    47        By similarity. 
ACT_SITE   89    89        By similarity. 
METAL   27    27        Calcium; via carbonyl oxygen (By similarity). 
METAL   29    29        Calcium; via carbonyl oxygen (By similarity). 
METAL   31    31        Calcium; via carbonyl oxygen (By similarity). 
METAL   48    48        Calcium (By similarity). 
DISULFID   26   115         
DISULFID   28    44         
DISULFID   43    95         
DISULFID   49   122         
DISULFID   50    88         
DISULFID   57    81         
DISULFID   75    86         
HELIX   2    13  12      
HELIX   17    21  5      
STRAND   22    24  3      
TURN   25    27  3      
STRAND   28    30  3      
HELIX   39    52  14      
TURN   59    61  3      
STRAND   66    69  4      
STRAND   72    75  4      
HELIX   81    98  18      
HELIX   100   102  3      
HELIX   105   107  3      
HELIX   112   115  4      
Sequence information
Length: 122 AA [This is the length of the unprocessed precursor] Molecular weight: 13828 Da [This is the MW of the unprocessed precursor] CRC64: 94438F9F1285FC7D [This is a checksum on the sequence]
        10         20         30         40         50         60 
NLFQFAKMIN GKLGAFSVWN YISYGCYCGW GGQGTPKDAT DRCCFVHDCC YGRVRGCNPK 

        70         80         90        100        110        120 
LAIYSYSFKK GNIVCGKNNG CLRDICECDR VAANCFHQNK NTYNKNYKFL SSSRCRQTSE 


QC 

P14420 in FASTA format

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