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UniProtKB/Swiss-Prot entry P10860


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DHE3_RAT
Primary accession number P10860
Secondary accession numbers Q66HI8 Q6LC16
Integrated into Swiss-Prot on July 1, 1989
Sequence was last modified on April 4, 2006 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 87)
Name and origin of the protein
Protein name Glutamate dehydrogenase 1, mitochondrial [Precursor]
Synonyms GDH
EC 1.4.1.3
Memory-related protein 2
MRG-2
Gene name
Name: Glud1
Synonyms: Glud
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=Sprague-Dawley;
TISSUE=Liver;
DOI=10.1093/nar/17.6.2356; PubMed=2704625 [NCBI, ExPASy, EBI, Israel, Japan]
Amuro N., Ooki K., Ito A., Goto Y., Okazaki T.;
"Nucleotide sequence of rat liver glutamate dehydrogenase cDNA.";
Nucleic Acids Res. 17:2356-2357(1989).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=Wistar;
TISSUE=Liver;
DOI=10.1093/nar/17.6.2355; PubMed=2704624 [NCBI, ExPASy, EBI, Israel, Japan]
Das A.T., Moerer P., Lamers W.H.;
"Nucleotide sequence of rat liver glutamate dehydrogenase cDNA.";
Nucleic Acids Res. 17:2355-2355(1989).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Kidney;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-30.
STRAIN=Wistar;
TISSUE=Liver;
PubMed=8094669 [NCBI, ExPASy, EBI, Israel, Japan]
Das A.T., Arnberg A.C., Malingre H., Moerer P., Charles R., Moorman A.F.M., Lamers W.H.;
"Isolation and characterization of the rat gene encoding glutamate dehydrogenase.";
Eur. J. Biochem. 211:795-803(1993).
[5]
PROTEIN SEQUENCE OF 108-123; 303-318; 347-363; 400-420; 481-496 AND 504-516, AND MASS SPECTROMETRY.
STRAIN=Sprague-Dawley;
TISSUE=Hippocampus, and Spinal cord;
Lubec G., Afjehi-Sadat L., Chen W.-Q.;
Submitted (APR-2007) to UniProtKB.
[6]
PROTEIN SEQUENCE OF 161-190.
PubMed=1684101 [NCBI, ExPASy, EBI, Israel, Japan]
Schwerdt G., Moller U., Huth W.;
"Identification of the CoA-modified forms of mitochondrial acetyl-CoA acetyltransferase and of glutamate dehydrogenase as nearest-neighbour proteins.";
Biochem. J. 280:353-357(1991).
[7]
NUCLEOTIDE SEQUENCE [MRNA] OF 431-558, FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
STRAIN=Wistar;
TISSUE=Hippocampus;
DOI=10.1073/pnas.94.18.9669; PubMed=9275181 [NCBI, ExPASy, EBI, Israel, Japan]
Cavallaro S., Meiri N., Yi C.-L., Musco S., Ma W., Goldberg J., Alkon D.L.;
"Late memory-related genes in the hippocampus revealed by RNA fingerprinting.";
Proc. Natl. Acad. Sci. U.S.A. 94:9669-9673(1997).
Comments
  • FUNCTION: May be involved in learning and memory reactions by increasing the turnover of the excitatory neurotransmitter glutamate.
  • CATALYTIC ACTIVITY: L-glutamate + H2O + NAD(P)+ = 2-oxoglutarate + NH3 + NAD(P)H.
  • ENZYME REGULATION: Subject to allosteric regulation. Activated by ADP. Inhibited by GTP and ATP. ADP can occupy the NADH binding site and activate the enzyme (By similarity).
  • SUBUNIT: Homohexamer.
  • SUBCELLULAR LOCATION: Mitochondrion matrix.
  • TISSUE SPECIFICITY: Widely expressed throughout the hippocampus. After induction by training, highly expressed in the dentate gyrus, pyrimidal layer and lacunosum molecolare.
  • INDUCTION: By water maze training in the hippocampus and in other regions of the brain including the laterodorsal nucleus of the thalamus and the cingulate cortex.
  • SIMILARITY: Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X14223; CAA32441.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X14044; CAA32202.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC081841; AAH81841.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X64365; CAA45717.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U95148; AAB70012.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S03707; S03707.
RefSeq NP_036702.1; -.
UniGene Rn.55106
3D structure databases
HSSP P00367; 1L1F. [HSSP ENTRY / PDB]
SMR P10860; 59-558.
ModBase P10860.
PTM databases
PhosphoSite P10860; -.
Organism-specific databases
RGD 2708; Glud1.
Gene expression databases
ArrayExpress P10860; -.
GermOnline ENSRNOG00000010222; Rattus norvegicus.
Ontologies
GO
GO:0005759; Cellular component: mitochondrial matrix (inferred from electronic annotation from UniProtKB-SubCell).
GO:0005524; Molecular function: ATP binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004353; Molecular function: glutamate dehydrogenase [NAD(P)+] activity (inferred from electronic annotation from EC).
GO:0005525; Molecular function: GTP binding (inferred from electronic annotation from UniProtKB-KW).
GO:0006520; Biological process: amino acid metabolic process (inferred from electronic annotation from InterPro).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR006095; Glu/Leu/Phe/Val_DHase.
IPR006096; Glu/Leu/Phe/Val_DHase_C.
IPR006097; Glu/Leu/Phe/Val_DHase_dimer.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR11606:SF2; GLFV_DH; 1.
Pfam PF00208; ELFV_dehydrog; 1.
PF02812; ELFV_dehydrog_N; 1.
Pfam graphical view of domain structure.
PRINTS PR00082; GLFDHDRGNASE.
PROSITE PS00074; GLFV_DEHYDROGENASE; 1.
Genome annotation databases
Ensembl ENSRNOG00000010222; Rattus norvegicus. [Contig view]
GeneID 24399; -.
KEGG rno:24399; -.
NMPDR fig|10116.3.peg.12078; -.
Phylogenomic databases
HOVERGEN P10860; -.
Other
NextBio 603195; -.
ProtoNet P10860.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Acetylation; ATP-binding; Direct protein sequencing; GTP-binding; Mitochondrion; NADP; Nucleotide-binding; Oxidoreductase; Phosphoprotein; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    53  53     Mitochondrion (By similarity). 
CHAIN   54   558  505     Glutamate dehydrogenase 1, mitochondrial. PRO_0000007213
NP_BIND   141   143  3     NAD (By similarity). 
ACT_SITE   183   183         
BINDING   147   147        Substrate (By similarity). 
BINDING   171   171        Substrate (By similarity). 
BINDING   176   176        NAD (By similarity). 
BINDING   252   252        NAD (By similarity). 
BINDING   266   266        GTP (By similarity). 
BINDING   270   270        GTP (By similarity). 
BINDING   319   319        GTP (By similarity). 
BINDING   322   322        GTP (By similarity). 
BINDING   438   438        Substrate (By similarity). 
BINDING   444   444        NAD (By similarity). 
BINDING   450   450        ADP (By similarity). 
BINDING   516   516        ADP (By similarity). 
MOD_RES   84    84        N6-acetyllysine (By similarity). 
MOD_RES   135   135        Phosphotyrosine (By similarity). 
MOD_RES   227   227        Phosphoserine (By similarity). 
MOD_RES   503   503        N6-acetyllysine (By similarity). 
MOD_RES   512   512        Phosphotyrosine (By similarity). 
MOD_RES   527   527        N6-acetyllysine (By similarity). 
CONFLICT   56    57        AA -> GP (in Ref. 1; CAA32441). 
Sequence information
Length: 558 AA [This is the length of the unprocessed precursor] Molecular weight: 61416 Da [This is the MW of the unprocessed precursor] CRC64: 388B8B5490C10F31 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MYRRLGEVLL LSRAGPAALG SAAADSAALL GWARGQPSAV PQPGLTPVAR RHYSEAATDR 

        70         80         90        100        110        120 
EDDPNFFKMV EGFFDRGASI VEDKLVEDLK TRENEEQKRN RVRGILRIIK PCNHVLSLSF 

       130        140        150        160        170        180 
PIRRDDGSWE VIEGYRAQHS QHRTPCKGGI RYSTDVSVDE VKALASLMTY KCAVVDVPFG 

       190        200        210        220        230        240 
GAKAGVKINP KNYTDNELEK ITRRFTMELA KKGFIGPGID VPAPDMSTGE REMSWIADTY 

       250        260        270        280        290        300 
ASTIGHYDIN AHACVTGKPI SQGGIHGRIS ATGRGVFHGI ENFINEASYM SILGMTPGLG 

       310        320        330        340        350        360 
DKTFVVQGFG NVGLHSMRYL HRFGAKCVGV GESDGSIWNP DGIDPKELED FKLQHGSILG 

       370        380        390        400        410        420 
FPKAKVYEGS ILEADCDILI PAASEKQLTK SNAPRVKAKI IAEGANGPTT PEADKIFLER 

       430        440        450        460        470        480 
NIMVIPDLYL NAGGVTVSYF EWLKNLNHVS YGRLTFKYER DSNYHLLMSV QESLERKFGK 

       490        500        510        520        530        540 
HGGTIPVVPT AEFQDRISGA SEKDIVHSGL AYTMERSARQ IMRTAMKYNL GLDLRTAAYV 

       550 
NAIEKVFKVY NEAGVTFT 

P10860 in FASTA format

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