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UniProtKB/Swiss-Prot entry P10515


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ODP2_HUMAN
Primary accession number P10515
Secondary accession numbers Q16783 Q53EP3
Integrated into Swiss-Prot on July 1, 1989
Sequence was last modified on November 25, 2008 (Sequence version 3)
Annotations were last modified on    June 16, 2009 (Entry version 124)
Name and origin of the protein
Protein name Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Precursor]
Synonyms EC 2.3.1.12
Pyruvate dehydrogenase complex E2 subunit
PDC-E2
PDCE2
E2
Dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex
70 kDa mitochondrial autoantigen of primary biliary cirrhosis
PBC
M2 antigen complex 70 kDa subunit
Gene name
Name: DLAT
Synonyms: DLTA
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANTS VAL-43; ALA-318 AND ASN-451.
TISSUE=Kidney;
Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.;
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature04632; PubMed=16554811 [NCBI, ExPASy, EBI, Israel, Japan]
Taylor T.D., Noguchi H., Totoki Y., Toyoda A., Kuroki Y., Dewar K., Lloyd C., Itoh T., Takeda T., Kim D.-W., She X., Barlow K.F., Bloom T., Bruford E., Chang J.L., Cuomo C.A., Eichler E., FitzGerald M.G., Jaffe D.B., LaButti K., Nicol R., Park H.-S., Seaman C., Sougnez C., Yang X., Zimmer A.R., Zody M.C., Birren B.W., Nusbaum C., Fujiyama A., Hattori M., Rogers J., Lander E.S., Sakaki Y.;
"Human chromosome 11 DNA sequence and analysis including novel gene identification.";
Nature 440:497-500(2006).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 33-647.
TISSUE=Placenta;
DOI=10.1073/pnas.85.19.7317; PubMed=3174635 [NCBI, ExPASy, EBI, Israel, Japan]
Coppel R.L., McNeilage L.J., Surh C.D., van de Water J., Spithill T.W., Whittingham S., Gershwin M.E.;
"Primary structure of the human M2 mitochondrial autoantigen of primary biliary cirrhosis: dihydrolipoamide acetyltransferase.";
Proc. Natl. Acad. Sci. U.S.A. 85:7317-7321(1988).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 73-647.
TISSUE=Liver;
DOI=10.1016/0014-5793(88)80337-5; PubMed=3191998 [NCBI, ExPASy, EBI, Israel, Japan]
Thekkumkara T.J., Ho L., Wexler I.D., Pon G., Liu T., Patel M.S.;
"Nucleotide sequence of a cDNA for the dihydrolipoamide acetyltransferase component of human pyruvate dehydrogenase complex.";
FEBS Lett. 240:45-48(1988).
[5]
IDENTIFICATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
Colinge J., Superti-Furga G., Bennett K.L.;
Submitted (OCT-2008) to UniProtKB.
[6]
STRUCTURE BY NMR OF 214-315.
PubMed=9649469 [NCBI, ExPASy, EBI, Israel, Japan]
Howard M.J., Fuller C., Broadhurst R.W., Perham R.N., Tang J.G., Quinn J., Diamond A.G., Yeaman S.J.;
"Three-dimensional structure of the major autoantigen in primary biliary cirrhosis.";
Gastroenterology 115:139-146(1998).
[7]
INVOLVEMENT IN PYRUVATE DEHYDROGENASE E2 DEFICIENCY.
DOI=10.1002/ana.20550; PubMed=16049940 [NCBI, ExPASy, EBI, Israel, Japan]
Head R.A., Brown R.M., Zolkipli Z., Shahdadpuri R., King M.D., Clayton P.T., Brown G.K.;
"Clinical and genetic spectrum of pyruvate dehydrogenase deficiency: dihydrolipoamide acetyltransferase (E2) deficiency.";
Ann. Neurol. 58:234-241(2005).
[8]
STRUCTURE BY NMR OF 92-186.
RIKEN structural genomics initiative (RSGI);
"Solution structure of RSGI RUH-058, a lipoyl domain of human 2-oxoacid dehydrogenase.";
Submitted (OCT-2006) to the PDB data bank.
Comments
  • FUNCTION: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
  • CATALYTIC ACTIVITY: Acetyl-CoA + enzyme N6-(dihydrolipoyl)lysine = CoA + enzyme N6-(S-acetyldihydrolipoyl)lysine.
  • COFACTOR: Binds 2 lipoyl cofactors covalently.
  • SUBUNIT: 20 to 30 alpha(2)-beta(2) tetramers of E1 + 6 homodimers of E3 + 60 copies of E2.
  • SUBCELLULAR LOCATION: Mitochondrion matrix.
  • DISEASE: Primary biliary cirrhosis is a chronic, progressive cholestatic liver disease characterized by the presence of antimitochondrial autoantibodies in patients' serum. It manifests with inflammatory obliteration of intra-hepatic bile duct, leading to liver cell damage and cirrhosis. Patients with primary biliary cirrhosis show autoantibodies against the E2 component of pyruvate dehydrogenase complex.
  • DISEASE: Defects in DLAT are the cause of pyruvate dehydrogenase E2 deficiency [MIM:245348]; also known as lactic acidemia due to defect of E2 lipoyl transacetylase of the pyruvate dehydrogenase complex. Pyruvate dehydrogenase (PDH) deficiency is a major cause of primary lactic acidosis and neurological dysfunction in infancy and early childhood. In this form of PDH deficiency episodic dystonia is the major neurological manifestation, with other more common features of pyruvate dehydrogenase deficiency, such as hypotonia and ataxia, being less prominent.
  • SIMILARITY: Belongs to the 2-oxoacid dehydrogenase family.
  • SIMILARITY: Contains 2 lipoyl-binding domains.
  • SEQUENCE CAUTION:
    • Sequence=AAA62253.1; Type=Frameshift; Positions=449, 451, 455;
    • Sequence=AAA62253.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AK223596; BAD97316.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP000907; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
J03866; AAA62253.1; ALT_SEQ; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Y00978; CAA68787.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00021338; -.
PIR A40497; A40497.
RefSeq NP_001922.2; -.
UniGene Hs.335551
3D structure databases
PDB
1FYC; NMR; -; A=214-315.[ExPASy / RCSB / EBI]
1Y8N; X-ray; 2.60 A; B=212-319.[ExPASy / RCSB / EBI]
1Y8O; X-ray; 2.48 A; B=212-319.[ExPASy / RCSB / EBI]
1Y8P; X-ray; 2.63 A; B=212-319.[ExPASy / RCSB / EBI]
2DNE; NMR; -; A=92-186.[ExPASy / RCSB / EBI]
2PNR; X-ray; 2.50 A; C/G=212-319.[ExPASy / RCSB / EBI]
2Q8I; X-ray; 2.60 A; B=212-319.[ExPASy / RCSB / EBI]
3B8K; EM; 8.80 A; A=409-647.[ExPASy / RCSB / EBI]
3CRK; X-ray; 2.30 A; C/D=214-300.[ExPASy / RCSB / EBI]
3CRL; X-ray; 2.61 A; C/D=214-300.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1FYC; -.
1Y8N; -.
1Y8O; -.
1Y8P; -.
2DNE; -.
2PNR; -.
2Q8I; -.
3B8K; -.
3CRK; -.
3CRL; -.
ModBase P10515.
Enzyme and pathway databases
BRENDA 2.3.1.12; 247.
Reactome REACT_1505; Integration of energy metabolism.
Organism-specific databases
GeneCards GC11P111401; -.
HGNC HGNC:2896; DLAT.
GenAtlas DLAT.
MIM 245348; phenotype. [NCBI / EBI]
608770; gene. [NCBI / EBI]
Orphanet 765; Pyruvate dehydrogenase deficiency.
PharmGKB PA27350; -.
Gene expression databases
ArrayExpress P10515; -.
Bgee P10515; -.
CleanEx HS_DLAT; -.
Ontologies
GO
GO:0005967; Cellular component: mitochondrial pyruvate dehydrogenase complex (non-traceable author statement from UniProtKB).
GO:0004742; Molecular function: dihydrolipoyllysine-residue acetyltransferase activity (non-traceable author statement from UniProtKB).
GO:0031405; Molecular function: lipoic acid binding (inferred from electronic annotation from UniProtKB-KW).
GO:0005515; Molecular function: protein binding (inferred from electronic annotation from InterPro).
GO:0006085; Biological process: acetyl-CoA biosynthetic process (non-traceable author statement from UniProtKB).
GO:0006096; Biological process: glycolysis (inferred from electronic annotation from UniProtKB-KW).
GO:0006090; Biological process: pyruvate metabolic process (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR003016; 2-oxoA_DH_lipoyl-BS.
IPR001078; 2-oxoacid_DH_actylTfrase.
IPR006257; AcTrfase_Pyrv_DH_cplx_L.
IPR000089; Biotin_lipoyl.
IPR004167; E3_bd.
Graphical view of domain structure.
Gene3D G3DSA:4.10.320.10; E3_bd; 1.
Pfam PF00198; 2-oxoacid_dh; 1.
PF00364; Biotin_lipoyl; 2.
PF02817; E3_binding; 1.
Pfam graphical view of domain structure.
ProDom PD001115; 2Oxoacid_dh; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR01349; PDHac_trf_mito; 1.
PROSITE PS50968; BIOTINYL_LIPOYL; 2.
PS00189; LIPOYL; 2.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE P10515; -.
Genome annotation databases
Ensembl ENSG00000150768; Homo sapiens. [Contig view]
GeneID 1737; -.
KEGG hsa:1737; -.
Phylogenomic databases
HOVERGEN P10515; -.
OMA P10515; ISNLGMN.
Other
DrugBank DB00157; NADH.
SOURCE DLAT; Homo sapiens.
ProtoNet P10515.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acyltransferase; Glycolysis; Lipoyl; Mitochondrion; Polymorphism; Repeat; Transferase; Transit peptide.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
TRANSIT   1    86  86     Mitochondrion. 
CHAIN   87   647  561     Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial. PRO_0000020479
DOMAIN   92   166  75     Lipoyl-binding 1. 
DOMAIN   219   293  75     Lipoyl-binding 2. 
REGION   358   389  32     E3-binding site (By similarity). 
REGION   417   647  231     Catalytic (By similarity). 
ACT_SITE   620   620        Potential. 
ACT_SITE   624   624        Potential. 
MOD_RES   132   132        N6-lipoyllysine. 
MOD_RES   259   259        N6-lipoyllysine. 
VARIANT   43    43  1     A -> V (in dbSNP:rs2303436 [NCBI]). VAR_047410 
VARIANT   98    98  1     S -> F (in dbSNP:rs537057 [NCBI]). VAR_047411 
VARIANT   99    99  1     L -> F (in dbSNP:rs537060 [NCBI]). VAR_047412 
VARIANT   209   209  1     Q -> R (in dbSNP:rs11553595 [NCBI]). VAR_047413 
VARIANT   313   313  1     D -> V (in dbSNP:rs11553592 [NCBI]). VAR_047414 
VARIANT   318   318  1     V -> A (in dbSNP:rs627441 [NCBI]). VAR_047415 
VARIANT   451   451  1     D -> N (in dbSNP:rs10891314 [NCBI]). VAR_047416 
CONFLICT   112   112        E -> K (in Ref. 4; CAA68787). 
CONFLICT   342   342        A -> T (in Ref. 3; AAA62253). 
CONFLICT   358   358        S -> D (in Ref. 3; AAA62253). 
STRAND   92    95  4      
STRAND   100   102  3      
STRAND   105   110  6      
STRAND   123   129  7      
STRAND   134   138  5      
STRAND   140   147  8      
STRAND   156   158  3      
STRAND   162   168  7      
HELIX   170   177  8      
STRAND   181   183  3      
STRAND   217   222  6      
STRAND   231   238  8      
STRAND   251   256  6      
STRAND   261   265  5      
STRAND   270   277  8      
STRAND   283   285  3      
STRAND   289   296  8      
HELIX   297   303  7      
Sequence information
Length: 647 AA [This is the length of the unprocessed precursor] Molecular weight: 68997 Da [This is the MW of the unprocessed precursor] CRC64: DD93A8E666E377C2 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MWRVCARRAQ NVAPWAGLEA RWTALQEVPG TPRVTSRSGP APARRNSVTT GYGGVRALCG 

        70         80         90        100        110        120 
WTPSSGATPR NRLLLQLLGS PGRRYYSLPP HQKVPLPSLS PTMQAGTIAR WEKKEGDKIN 

       130        140        150        160        170        180 
EGDLIAEVET DKATVGFESL EECYMAKILV AEGTRDVPIG AIICITVGKP EDIEAFKNYT 

       190        200        210        220        230        240 
LDSSAAPTPQ AAPAPTPAAT ASPPTPSAQA PGSSYPPHMQ VLLPALSPTM TMGTVQRWEK 

       250        260        270        280        290        300 
KVGEKLSEGD LLAEIETDKA TIGFEVQEEG YLAKILVPEG TRDVPLGTPL CIIVEKEADI 

       310        320        330        340        350        360 
SAFADYRPTE VTDLKPQVPP PTPPPVAAVP PTPQPLAPTP SAPCPATPAG PKGRVFVSPL 

       370        380        390        400        410        420 
AKKLAVEKGI DLTQVKGTGP DGRITKKDID SFVPSKVAPA PAAVVPPTGP GMAPVPTGVF 

       430        440        450        460        470        480 
TDIPISNIRR VIAQRLMQSK QTIPHYYLSI DVNMGEVLLV RKELNKILEG RSKISVNDFI 

       490        500        510        520        530        540 
IKASALACLK VPEANSSWMD TVIRQNHVVD VSVAVSTPAG LITPIVFNAH IKGVETIAND 

       550        560        570        580        590        600 
VVSLATKARE GKLQPHEFQG GTFTISNLGM FGIKNFSAII NPPQACILAI GASEDKLVPA 

       610        620        630        640 
DNEKGFDVAS MMSVTLSCDH RVVDGAVGAQ WLAEFRKYLE KPITMLL 

P10515 in FASTA format

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