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UniProtKB/Swiss-Prot entry P09936


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name UCHL1_HUMAN
Primary accession number P09936
Secondary accession number Q71UM0
Integrated into Swiss-Prot on July 1, 1989
Sequence was last modified on November 1, 1990 (Sequence version 2)
Annotations were last modified on    September 23, 2008 (Entry version 103)
Name and origin of the protein
Protein name Ubiquitin carboxyl-terminal hydrolase isozyme L1
Synonyms UCH-L1
EC 3.4.19.12
EC 6.-.-.-
Ubiquitin thioesterase L1
Neuron cytoplasmic protein 9.5
PGP 9.5
PGP9.5
Gene name
Name: UCHL1
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Lung, and Muscle;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[2]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-15.
PubMed=2163617 [NCBI, ExPASy, EBI, Israel, Japan]
Day I.N.M., Hinks L.J., Thompson R.J.;
"The structure of the human gene encoding protein gene product 9.5 (PGP9.5), a neuron-specific ubiquitin C-terminal hydrolase.";
Biochem. J. 268:521-524(1990).
[3]
PROTEIN SEQUENCE OF 1-15 AND 214-221, SUSCEPTIBILITY TO OXIDATION, IDENTIFICATION BY MASS SPECTROMETRY, TISSUE SPECIFICITY, AND DISEASE.
DOI=10.1074/jbc.M314124200; PubMed=14722078 [NCBI, ExPASy, EBI, Israel, Japan]
Choi J., Levey A.I., Weintraub S.T., Rees H.D., Gearing M., Chin L.-S., Li L.;
"Oxidative modifications and down-regulation of ubiquitin carboxyl-terminal hydrolase L1 associated with idiopathic Parkinson's and Alzheimer's diseases.";
J. Biol. Chem. 279:13256-13264(2004).
[4]
PROTEIN SEQUENCE OF 84-105; 136-153 AND 158-195, AND MASS SPECTROMETRY.
TISSUE=Brain, and Cajal-Retzius cell;
Lubec G., Afjehi-Sadat L.;
Submitted (MAR-2007) to UniProtKB.
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 7-223, AND PARTIAL PROTEIN SEQUENCE.
DOI=10.1016/0014-5793(87)81327-3; PubMed=2947814 [NCBI, ExPASy, EBI, Israel, Japan]
Day I.N.M., Thompson R.J.;
"Molecular cloning of cDNA coding for human PGP 9.5 protein. A novel cytoplasmic marker for neurones and neuroendocrine cells.";
FEBS Lett. 210:157-160(1987).
[6]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 16-223, VARIANT MET-93, AND BIOPHYSICOCHEMICAL PROPERTIES.
DOI=10.1038/26652; PubMed=9774100 [NCBI, ExPASy, EBI, Israel, Japan]
Leroy E., Boyer R., Auburger G., Leube B., Ulm G., Mezey E., Harta G., Brownstein M.J., Jonnalagada S., Chernova T., Dehejia A., Lavedan C., Gasser T., Steinbach P.J., Wilkinson K.D., Polymeropoulos M.H.;
"The ubiquitin pathway in Parkinson's disease.";
Nature 395:451-452(1998).
[7]
PROTEIN SEQUENCE OF 20-25; 79-81; 106-121 AND 134-151.
DOI=10.1016/0014-5793(91)80300-R; PubMed=1849484 [NCBI, ExPASy, EBI, Israel, Japan]
Honore B., Rasmussen H.H., Vandekerckhove J., Celis J.E.;
"Neuronal protein gene product 9.5 (IEF SSP 6104) is expressed in cultured human MRC-5 fibroblasts of normal origin and is strongly down-regulated in their SV40 transformed counterparts.";
FEBS Lett. 280:235-240(1991).
[8]
PROTEIN SEQUENCE OF 20-25; 79-91; 106-123 AND 136-151.
PubMed=1286667 [NCBI, ExPASy, EBI, Israel, Japan]
Rasmussen H.H., van Damme J., Puype M., Gesser B., Celis J.E., Vandekerckhove J.;
"Microsequences of 145 proteins recorded in the two-dimensional gel protein database of normal human epidermal keratinocytes.";
Electrophoresis 13:960-969(1992).
[9]
ACTIVE SITE, MUTAGENESIS OF GLN-73; CYS-90; HIS-97; HIS-161 AND ASP-176, AND BIOPHYSICOCHEMICAL PROPERTIES.
DOI=10.1021/bi960099f; PubMed=8639624 [NCBI, ExPASy, EBI, Israel, Japan]
Larsen C.N., Price J.S., Wilkinson K.D.;
"Substrate binding and catalysis by ubiquitin C-terminal hydrolases: identification of two active site residues.";
Biochemistry 35:6735-6744(1996).
[10]
FUNCTION, AND TISSUE SPECIFICITY.
DOI=10.1006/bbrc.1998.9532; PubMed=9790970 [NCBI, ExPASy, EBI, Israel, Japan]
Wada H., Kito K., Caskey L.S., Yeh E.T.H., Kamitani T.;
"Cleavage of the C-terminus of NEDD8 by UCH-L3.";
Biochem. Biophys. Res. Commun. 251:688-692(1998).
[11]
FUNCTION, AND CHARACTERIZATION OF VARIANTS TYR-18 AND MET-93.
DOI=10.1016/S0092-8674(02)01012-7; PubMed=12408865 [NCBI, ExPASy, EBI, Israel, Japan]
Liu Y., Fallon L., Lashuel H.A., Liu Z., Lansbury P.T. Jr.;
"The UCH-L1 gene encodes two opposing enzymatic activities that affect alpha-synuclein degradation and Parkinson's disease susceptibility.";
Cell 111:209-218(2002).
[12]
INTERACTION WITH COPS5.
DOI=10.1038/sj.onc.1205390; PubMed=12082530 [NCBI, ExPASy, EBI, Israel, Japan]
Caballero O.L., Resto V., Patturajan M., Meerzaman D., Guo M.Z., Engles J., Yochem R., Ratovitski E., Sidransky D., Jen J.;
"Interaction and colocalization of PGP9.5 with JAB1 and p27(Kip1).";
Oncogene 21:3003-3010(2002).
[13]
CHARACTERIZATION OF VARIANTS TYR-18 AND MET-93, MUTAGENESIS OF CYS-90, AND BIOPHYSICOCHEMICAL PROPERTIES.
DOI=10.1016/S0006-291X(03)00555-2; PubMed=12705903 [NCBI, ExPASy, EBI, Israel, Japan]
Nishikawa K., Li H., Kawamura R., Osaka H., Wang Y.-L., Hara Y., Hirokawa T., Manago Y., Amano T., Noda M., Aoki S., Wada K.;
"Alterations of structure and hydrolase activity of parkinsonism-associated human ubiquitin carboxyl-terminal hydrolase L1 variants.";
Biochem. Biophys. Res. Commun. 304:176-183(2003).
[14]
VARIANT MET-93.
DOI=10.1016/S0304-3940(99)00465-6; PubMed=10454131 [NCBI, ExPASy, EBI, Israel, Japan]
Harhangi B.S., Farrer M.J., Lincoln S., Bonifati V., Meco G., De Michele G., Brice A., Durr A., Martinez M., Gasser T., Bereznai B., Vaughan J.R., Wood N.W., Hardy J., Oostra B.A., Breteler M.M.;
"The Ile93Met mutation in the ubiquitin carboxy-terminal-hydrolase-L1 gene is not observed in European cases with familial Parkinson's disease.";
Neurosci. Lett. 270:1-4(1999).
[15]
VARIANT TYR-18.
PubMed=10203348 [NCBI, ExPASy, EBI, Israel, Japan]
Lincoln S., Vaughan J., Wood N., Baker M., Adamson J., Gwinn-Hardy K., Lynch T., Hardy J., Farrer M.;
"Low frequency of pathogenic mutations in the ubiquitin carboxy-terminal hydrolase gene in familial Parkinson's disease.";
NeuroReport 10:427-429(1999).
[16]
VARIANT TYR-18.
DOI=10.1016/S0304-3940(00)01510-X; PubMed=11027850 [NCBI, ExPASy, EBI, Israel, Japan]
Mellick G.D., Silburn P.A.;
"The ubiquitin carboxy-terminal hydrolase-L1 gene S18Y polymorphism does not confer protection against idiopathic Parkinson's disease.";
Neurosci. Lett. 293:127-130(2000).
[17]
INVERSE ASSOCIATION OF VARIANT TYR-18 WITH PARKINSON DISEASE.
DOI=10.1002/ana.20017; PubMed=15048890 [NCBI, ExPASy, EBI, Israel, Japan]
UCHL1 global genetics consortium;
Maraganore D.M., Lesnick T.G., Elbaz A., Chartier-Harlin M.-C., Gasser T., Krueger R., Hattori N., Mellick G.D., Quattrone A., Satoh J., Toda T., Wang J., Ioannidis J.P.A., de Andrade M., Rocca W.A.;
"UCHL1 is a Parkinson's disease susceptibility gene.";
Ann. Neurol. 55:512-521(2004).
[18]
ERRATUM.
UCHL1 global genetics consortium;
Maraganore D.M., Lesnick T.G., Elbaz A., Chartier-Harlin M.-C., Gasser T., Krueger R., Hattori N., Mellick G.D., Quattrone A., Satoh J., Toda T., Wang J., Ioannidis J.P.A., de Andrade M., Rocca W.A.;
Ann. Neurol. 55:899-899(2004).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
BC000332; AAH00332.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC005117; AAH05117.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC006305; AAH06305.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X17377; CAA35249.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X04741; CAA28443.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF076273; AAD09172.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF060834; AAD09172.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF076269; AAD09172.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF076270; AAD09172.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF076271; AAD09172.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF076272; AAD09172.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A25856; A25856.
RefSeq NP_004172.2; -.
UniGene Hs.518731
3D structure databases
PDB
2ETL; X-ray; 2.40 A; A/B=1-223.[ExPASy / RCSB / EBI]
PDBsum 2ETL; -.
ModBase P09936.
Protein-protein interaction databases
IntAct P09936; -.
Protein family/group databases
MEROPS C12.001; -.
2D gel databases
Aarhus/Ghent-2DPAGE 6123; IEF.
DOSAC-COBS-2DPAGE P09936; -.
Organism-specific databases
H-InvDB HIX0004176; -.
HGNC HGNC:12513; UCHL1.
GenAtlas UCHL1.
HPA CAB002580; -.
HPA005993; -.
MIM 191342; gene+phenotype. [NCBI / EBI]
Orphanet 2828; Parkinson disease, genetic types.
33540; Parkinson's disease dementia, familial.
PharmGKB PA37160; -.
GeneCards P09936.
Gene expression databases
ArrayExpress P09936; -.
CleanEx HS_UCHL1; -.
GermOnline ENSG00000154277; Homo sapiens.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (traceable author statement from UniProtKB).
GO:0004197; Molecular function: cysteine-type endopeptidase activity (inferred from direct assay from UniProtKB).
GO:0008242; Molecular function: omega peptidase activity (inferred from direct assay from UniProtKB).
GO:0043130; Molecular function: ubiquitin binding (inferred from direct assay from UniProtKB).
GO:0004221; Molecular function: ubiquitin thiolesterase activity (traceable author statement from UniProtKB).
GO:0016579; Biological process: protein deubiquitination (inferred from direct assay from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR001578; Peptidase_C12.
Graphical view of domain structure.
Gene3D G3DSA:3.40.532.10; Peptidase_C12; 1.
PANTHER PTHR10589; Peptidase_C12; 1.
Pfam PF01088; Peptidase_C12; 1.
Pfam graphical view of domain structure.
PRINTS PR00707; UBCTHYDRLASE.
ProDom PD350662; Peptidase_C12; 1.
[Domain structure / List of seq. sharing at least 1 domain]
PROSITE PS00140; UCH_1; 1.
BLOCKS P09936.
Proteomic databases
PeptideAtlas P09936; -.
Genome annotation databases
Ensembl ENSG00000154277; Homo sapiens. [Contig view]
GeneID 7345; -.
KEGG hsa:7345; -.
Phylogenomic databases
HOGENOM P09936; -.
HOVERGEN P09936; -.
Other
LinkHub P09936; -.
SOURCE UCHL1; Homo sapiens.
ProtoNet P09936.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cytoplasm; Direct protein sequencing; Disease mutation; Glycoprotein; Hydrolase; Ligase; Oxidation; Polymorphism; Protease; Thiol protease; Ubl conjugation pathway.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   223  223     Ubiquitin carboxyl-terminal hydrolase isozyme L1. PRO_0000211055
REGION   37    54  18     Ubiquitin binding 1 (Potential). 
REGION   170   178  9     Ubiquitin binding 2 (Potential). 
ACT_SITE   90    90         
ACT_SITE   161   161         
ACT_SITE   176   176         
SITE   1     1  1     Susceptible to oxidation. 
SITE   6     6  1     Susceptible to oxidation. 
SITE   12    12  1     Susceptible to oxidation. 
SITE   124   124  1     Susceptible to oxidation. 
SITE   179   179  1     Susceptible to oxidation. 
SITE   220   220  1     Susceptible to oxidation. 
VARIANT   18    18  1     S -> Y (may reduce the risk for PD; loss of dimerization ability and impaired ligase activity; dbSNP:rs5030732 [NCBI]). VAR_015677 [3D]
VARIANT   93    93  1     I -> M (in a PD patient; impaired enzymatic hydrolase activity). VAR_015678 [3D]
MUTAGEN   73    73        Q->R: No effect on enzymatic parameters. 
MUTAGEN   90    90        C->S: Abolishes enzymatic activity. 
MUTAGEN   97    97        H->Q,N: 2-fold increase in affinity for ubiquitin ethyl ester, slight reduction in enzymatic activity. 
MUTAGEN   161   161        H->D: 10000-fold decrease in enzymatic activity; no change in affinity for ubiquitin ethyl ester. 
MUTAGEN   161   161        H->K,Q,N,Y: Abolishes enzymatic activity. 
MUTAGEN   176   176        D->N: 6-fold decrease in affinity for ubiquitin ethyl ester; 97.5% decrease in enzymatic activity. 
HELIX   10    19  10      
STRAND   24    30  7      
STRAND   39    42  4      
STRAND   46    54  9      
HELIX   57    70  14      
TURN   71    74  4      
HELIX   90   100  11      
TURN   101   105  5      
HELIX   113   120  8      
TURN   121   123  3      
HELIX   126   135  10      
HELIX   137   147  11      
STRAND   160   168  9      
STRAND   171   175  5      
STRAND   179   181  3      
STRAND   183   187  5      
HELIX   193   206  14      
STRAND   215   221  7      
Sequence information
Length: 223 AA [This is the length of the unprocessed precursor] Molecular weight: 24824 Da [This is the MW of the unprocessed precursor] CRC64: C9E972AC4DA5DA8A [This is a checksum on the sequence]
        10         20         30         40         50         60 
MQLKPMEINP EMLNKVLSRL GVAGQWRFVD VLGLEEESLG SVPAPACALL LLFPLTAQHE 

        70         80         90        100        110        120 
NFRKKQIEEL KGQEVSPKVY FMKQTIGNSC GTIGLIHAVA NNQDKLGFED GSVLKQFLSE 

       130        140        150        160        170        180 
TEKMSPEDRA KCFEKNEAIQ AAHDAVAQEG QCRVDDKVNF HFILFNNVDG HLYELDGRMP 

       190        200        210        220 
FPVNHGASSE DTLLKDAAKV CREFTEREQG EVRFSAVALC KAA 

P09936 in FASTA format

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