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UniProtKB/Swiss-Prot entry P09238


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name MMP10_HUMAN
Primary accession number P09238
Secondary accession numbers None
Integrated into Swiss-Prot on July 1, 1989
Sequence was last modified on July 1, 1989 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 103)
Name and origin of the protein
Protein name Stromelysin-2 [Precursor]
Synonyms SL-2
EC 3.4.24.22
Matrix metalloproteinase-10
MMP-10
Transin-2
Gene name
Name: MMP10
Synonyms: STMY2
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2844164 [NCBI, ExPASy, EBI, Israel, Japan]
Muller D., Quantin B., Gesnel M.-C., Millon-Collard R., Abecassis J., Breathnach R.;
"The collagenase gene family in humans consists of at least four members.";
Biochem. J. 253:187-192(1988).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., Phelan M., Farmer A.;
"Cloning of human full-length CDSs in BD Creator(TM) system donor vector.";
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS VAL-4; LYS-53; ARG-65; LEU-226; GLU-282; PHE-440 AND LEU-475.
Livingston R.J., Rieder M.J., Chung M.-W., Ritchie T.K., Olson A.N., Nguyen C.P., Nguyen D.A., Poel C.L., Chambers S.W., Schackwitz W.S., Sherwood J.K., Sherwood A.M., Leithauser B.J., Nickerson D.A.;
"NIEHS-SNPs, environmental genome project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu).";
Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Ovary;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
VARIANT [LARGE SCALE ANALYSIS] GLN-142.
DOI=10.1126/science.1133427; PubMed=16959974 [NCBI, ExPASy, EBI, Israel, Japan]
Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V., Gazdar A.F., Hartigan J., Wu L., Liu C., Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., Vogelstein B., Kinzler K.W., Velculescu V.E.;
"The consensus coding sequences of human breast and colorectal cancers.";
Science 314:268-274(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X07820; CAA30679.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT007442; AAP36110.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY744675; AAU21039.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC002591; AAH02591.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A28816; KCHUS2.
RefSeq NP_002416.1; -.
UniGene Hs.2258
3D structure databases
PDB
1Q3A; X-ray; 2.10 A; A/B/C=99-263.[ExPASy / RCSB / EBI]
PDBsum 1Q3A; -.
ModBase P09238.
Protein family/group databases
MEROPS M10.006; -.
PTM databases
PhosphoSite P09238; -.
Polymorphism databases
NIEHS-SNPs MMP10.
Organism-specific databases
H-InvDB HIX0010066; -.
HGNC HGNC:7156; MMP10.
GenAtlas MMP10.
HPA CAB002159; -.
MIM 185260; gene. [NCBI / EBI]
PharmGKB PA30868; -.
GeneCards P09238.
Gene expression databases
ArrayExpress P09238; -.
CleanEx HS_MMP10; -.
GermOnline ENSG00000166670; Homo sapiens.
Ontologies
GO
GO:0005615; Cellular component: extracellular space (traceable author statement from ProtInc).
GO:0005578; Cellular component: proteinaceous extracellular matrix (traceable author statement from ProtInc).
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004222; Molecular function: metalloendopeptidase activity (traceable author statement from ProtInc).
GO:0008270; Molecular function: zinc ion binding (traceable author statement from ProtInc).
GO:0030574; Biological process: collagen catabolic process (inferred from electronic annotation from UniProtKB-KW).
GO:0006508; Biological process: proteolysis (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR000585; Hemopexin.
IPR001818; Pept_M10A_M12B.
IPR016293; Pept_M10A_matrix.
IPR006025; Pept_M_Zn_BS.
IPR006026; Peptidase_M.
IPR002477; Peptidoglycan-bd-like.
Graphical view of domain structure.
Gene3D G3DSA:2.110.10.10; Hemopexin; 1.
Pfam PF00045; Hemopexin; 4.
PF00413; Peptidase_M10; 1.
PF01471; PG_binding_1; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF001191; Peptidase_M10A_matrix; 1.
PRINTS PR00138; MATRIXIN.
SMART SM00120; HX; 4.
SM00235; ZnMc; 1.
SMART graphical view of domain structure.
PROSITE PS00546; CYSTEINE_SWITCH; 1.
PS00024; HEMOPEXIN; 1.
PS00142; ZINC_PROTEASE; 1.
ProtoNet P09238.
Genome annotation databases
Ensembl ENSG00000166670; Homo sapiens. [Contig view]
GeneID 4319; -.
KEGG hsa:4319; -.
Phylogenomic databases
HOGENOM P09238; -.
HOVERGEN P09238; -.
Other
NextBio 16993; -.
SOURCE MMP10; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Calcium; Collagen degradation; Extracellular matrix; Hydrolase; Metal-binding; Metalloprotease; Polymorphism; Protease; Repeat; Secreted; Signal; Zinc; Zymogen.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    17  17     Probable. 
PROPEP   18    98  81     Activation peptide. PRO_0000028764
CHAIN   99   476  378     Stromelysin-2. PRO_0000028765
DOMAIN   295   337  43     Hemopexin-like 1. 
DOMAIN   339   382  44     Hemopexin-like 2. 
DOMAIN   387   434  48     Hemopexin-like 3. 
DOMAIN   436   476  41     Hemopexin-like 4. 
MOTIF   89    96  8     Cysteine switch (By similarity). 
ACT_SITE   218   218        By similarity. 
METAL   91    91        Zinc; in inhibited form (By similarity). 
METAL   217   217        Zinc; catalytic (By similarity). 
METAL   221   221        Zinc; catalytic (By similarity). 
METAL   227   227        Zinc; catalytic (By similarity). 
DISULFID   289   476        By similarity. 
VARIANT   4     4  1     L -> V (in dbSNP:rs17435959 [NCBI]). VAR_020949 
VARIANT   53    53  1     R -> K (in dbSNP:rs486055 [NCBI]). VAR_020950 
VARIANT   65    65  1     G -> R (in dbSNP:rs17293607 [NCBI]). VAR_020951 
VARIANT   142   142  1     E -> Q (in a breast cancer sample; somatic mutation). VAR_036139 [3D]
VARIANT   226   226  1     F -> L (in dbSNP:rs17860971 [NCBI]). VAR_020952 [3D]
VARIANT   282   282  1     G -> E (in dbSNP:rs17860973 [NCBI]). VAR_020953 
VARIANT   440   440  1     L -> F (in dbSNP:rs17860996 [NCBI]). VAR_020954 
VARIANT   475   475  1     H -> L (in dbSNP:rs17861009 [NCBI]). VAR_020955 
STRAND   111   117  7      
HELIX   126   141  16      
STRAND   147   154  8      
STRAND   157   163  7      
STRAND   168   170  3      
STRAND   175   178  4      
STRAND   181   183  3      
STRAND   186   188  3      
TURN   189   192  4      
STRAND   194   197  4      
STRAND   202   210  9      
HELIX   211   223  13      
STRAND   231   233  3      
HELIX   252   262  11      
Sequence information
Length: 476 AA [This is the length of the unprocessed precursor] Molecular weight: 54151 Da [This is the MW of the unprocessed precursor] CRC64: 516DCDDFEF92A0D6 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MMHLAFLVLL CLPVCSAYPL SGAAKEEDSN KDLAQQYLEK YYNLEKDVKQ FRRKDSNLIV 

        70         80         90        100        110        120 
KKIQGMQKFL GLEVTGKLDT DTLEVMRKPR CGVPDVGHFS SFPGMPKWRK THLTYRIVNY 

       130        140        150        160        170        180 
TPDLPRDAVD SAIEKALKVW EEVTPLTFSR LYEGEADIMI SFAVKEHGDF YSFDGPGHSL 

       190        200        210        220        230        240 
AHAYPPGPGL YGDIHFDDDE KWTEDASGTN LFLVAAHELG HSLGLFHSAN TEALMYPLYN 

       250        260        270        280        290        300 
SFTELAQFRL SQDDVNGIQS LYGPPPASTE EPLVPTKSVP SGSEMPAKCD PALSFDAIST 

       310        320        330        340        350        360 
LRGEYLFFKD RYFWRRSHWN PEPEFHLISA FWPSLPSYLD AAYEVNSRDT VFIFKGNEFW 

       370        380        390        400        410        420 
AIRGNEVQAG YPRGIHTLGF PPTIRKIDAA VSDKEKKKTY FFAADKYWRF DENSQSMEQG 

       430        440        450        460        470 
FPRLIADDFP GVEPKVDAVL QAFGFFYFFS GSSQFEFDPN ARMVTHILKS NSWLHC 

P09238 in FASTA format

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