[1]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=3547406 [NCBI, ExPASy, EBI, Israel, Japan]
Sweetser D.,
Nonet M.,
Young R.A.;
"Prokaryotic and eukaryotic RNA polymerases have homologous core subunits.";
Proc. Natl. Acad. Sci. U.S.A. 84:1192-1196(1987).
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[2]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=S288c / FY1678;
DOI=10.1002/(SICI)1097-0061(199701)13:1<73::AID-YEA52>3.3.CO;2-D; PubMed=9046089 [NCBI, ExPASy, EBI, Israel, Japan]
Bordonne R.,
Camasses A.,
Madania A.,
Poch O.,
Tarassov I.A.,
Winsor B.,
Martin R.P.;
"Analysis of a 35.6 kb region on the right arm of Saccharomyces cerevisiae chromosome XV.";
Yeast 13:73-83(1997).
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[3]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=S288c / FY1678;
PubMed=9169874 [NCBI, ExPASy, EBI, Israel, Japan]
Dujon B.,
Albermann K.,
Aldea M.,
Alexandraki D.,
Ansorge W.,
Arino J.,
Benes V.,
Bohn C.,
Bolotin-Fukuhara M.,
Bordonne R.,
Boyer J.,
Camasses A.,
Casamayor A.,
Casas C.,
Cheret G.,
Cziepluch C.,
Daignan-Fornier B.,
Dang V.-D.,
de Haan M.,
Delius H.,
Durand P.,
Fairhead C.,
Feldmann H.,
Gaillon L.,
Galisson F.,
Gamo F.-J.,
Gancedo C.,
Goffeau A.,
Goulding S.E.,
Grivell L.A.,
Habbig B.,
Hand N.J.,
Hani J.,
Hattenhorst U.,
Hebling U.,
Hernando Y.,
Herrero E.,
Heumann K.,
Hiesel R.,
Hilger F.,
Hofmann B.,
Hollenberg C.P.,
Hughes B.,
Jauniaux J.-C.,
Kalogeropoulos A.,
Katsoulou C.,
Kordes E.,
Lafuente M.J.,
Landt O.,
Louis E.J.,
Maarse A.C.,
Madania A.,
Mannhaupt G.,
Marck C.,
Martin R.P.,
Mewes H.-W.,
Michaux G.,
Paces V.,
Parle-McDermott A.G.,
Pearson B.M.,
Perrin A.,
Pettersson B.,
Poch O.,
Pohl T.M.,
Poirey R.,
Portetelle D.,
Pujol A.,
Purnelle B.,
Ramezani Rad M.,
Rechmann S.,
Schwager C.,
Schweizer M.,
Sor F.,
Sterky F.,
Tarassov I.A.,
Teodoru C.,
Tettelin H.,
Thierry A.,
Tobiasch E.,
Tzermia M.,
Uhlen M.,
Unseld M.,
Valens M.,
Vandenbol M.,
Vetter I.,
Vlcek C.,
Voet M.,
Volckaert G.,
Voss H.,
Wambutt R.,
Wedler H.,
Wiemann S.,
Winsor B.,
Wolfe K.H.,
Zollner A.,
Zumstein E.,
Kleine K.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.";
Nature 387:98-102(1997).
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[4]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 549-773.
STRAIN=ATCC 18824 / CBS 1171 / DSM 70449 / IFO 10217 / NRRL Y-12632;
DOI=10.1016/S1567-1356(03)00012-6; PubMed=12748053 [NCBI, ExPASy, EBI, Israel, Japan]
Kurtzman C.P.,
Robnett C.J.;
"Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses.";
FEMS Yeast Res. 3:417-432(2003).
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[5]
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PROTEIN SEQUENCE OF 837-844.
PubMed=2204624 [NCBI, ExPASy, EBI, Israel, Japan]
Riva M.,
Carles C.,
Sentenac A.,
Grachev M.A.,
Mustaev A.A.,
Zaychikov E.F.;
"Mapping the active site of yeast RNA polymerase B (II).";
J. Biol. Chem. 265:16498-16503(1990).
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[6]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-915; THR-916 AND SER-919, AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M700468-MCP200; PubMed=18407956 [NCBI, ExPASy, EBI, Israel, Japan]
Albuquerque C.P.,
Smolka M.B.,
Payne S.H.,
Bafna V.,
Eng J.,
Zhou H.;
"A multidimensional chromatography technology for in-depth phosphoproteome analysis.";
Mol. Cell. Proteomics 7:1389-1396(2008).
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[7]
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ELECTRON MICROSCOPY OF THE RNA POL II/TFIIF COMPLEX.
DOI=10.1016/S1097-2765(03)00387-3; PubMed=14580350 [NCBI, ExPASy, EBI, Israel, Japan]
Chung W.H.,
Craighead J.L.,
Chang W.H.,
Ezeokonkwo C.,
Bareket-Samish A.,
Kornberg R.D.,
Asturias F.J.;
"RNA polymerase II/TFIIF structure and conserved organization of the initiation complex.";
Mol. Cell 12:1003-1013(2003).
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[8]
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LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
DOI=10.1038/nature02046; PubMed=14562106 [NCBI, ExPASy, EBI, Israel, Japan]
Ghaemmaghami S.,
Huh W.-K.,
Bower K.,
Howson R.W.,
Belle A.,
Dephoure N.,
O'Shea E.K.,
Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
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[9]
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INTERACTION WITH RTT103.
DOI=10.1038/nature03041; PubMed=15565157 [NCBI, ExPASy, EBI, Israel, Japan]
Kim M.,
Krogan N.J.,
Vasiljeva L.,
Rando O.J.,
Nedea E.,
Greenblatt J.F.,
Buratowski S.;
"The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.";
Nature 432:517-522(2004).
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[10]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-919, AND MASS SPECTROMETRY.
DOI=10.1021/pr060559j; PubMed=17330950 [NCBI, ExPASy, EBI, Israel, Japan]
Li X.,
Gerber S.A.,
Rudner A.D.,
Beausoleil S.A.,
Haas W.,
Villen J.,
Elias J.E.,
Gygi S.P.;
"Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.";
J. Proteome Res. 6:1190-1197(2007).
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[11]
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X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
DOI=10.1126/science.1059493; PubMed=11313498 [NCBI, ExPASy, EBI, Israel, Japan]
Cramer P.,
Bushnell D.A.,
Kornberg R.D.;
"Structural basis of transcription: RNA polymerase II at 2.8 Angstrom resolution.";
Science 292:1863-1876(2001).
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[12]
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X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
DOI=10.1126/science.1059495; PubMed=11313499 [NCBI, ExPASy, EBI, Israel, Japan]
Gnatt A.L.,
Cramer P.,
Fu J.,
Bushnell D.A.,
Kornberg R.D.;
"Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution.";
Science 292:1876-1882(2001).
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[13]
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X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF THE RNA POL II CORE COMPLEX IN COMPLEX WITH ALPHA-AMANITIN.
DOI=10.1073/pnas.251664698; PubMed=11805306 [NCBI, ExPASy, EBI, Israel, Japan]
Bushnell D.A.,
Cramer P.,
Kornberg R.D.;
"Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution.";
Proc. Natl. Acad. Sci. U.S.A. 99:1218-1222(2002).
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[14]
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X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH DST1.
DOI=10.1016/S0092-8674(03)00598-1; PubMed=12914699 [NCBI, ExPASy, EBI, Israel, Japan]
Kettenberger H.,
Armache K.J.,
Cramer P.;
"Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage.";
Cell 114:347-357(2003).
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[15]
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X-RAY CRYSTALLOGRAPHY (4.2 ANGSTROMS) OF THE RNA POL II COMPLEX.
DOI=10.1073/pnas.1030608100; PubMed=12746495 [NCBI, ExPASy, EBI, Israel, Japan]
Armache K.J.,
Kettenberger H.,
Cramer P.;
"Architecture of initiation-competent 12-subunit RNA polymerase II.";
Proc. Natl. Acad. Sci. U.S.A. 100:6964-6968(2003).
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[16]
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X-RAY CRYSTALLOGRAPHY (4.1 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
DOI=10.1073/pnas.1130601100; PubMed=12746498 [NCBI, ExPASy, EBI, Israel, Japan]
Bushnell D.A.,
Kornberg R.D.;
"Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription.";
Proc. Natl. Acad. Sci. U.S.A. 100:6969-6973(2003).
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[17]
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X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
DOI=10.1016/j.cell.2004.10.016; PubMed=15537538 [NCBI, ExPASy, EBI, Israel, Japan]
Westover K.D.,
Bushnell D.A.,
Kornberg R.D.;
"Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center.";
Cell 119:481-489(2004).
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[18]
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X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS).
DOI=10.1016/j.molcel.2004.11.040; PubMed=15610738 [NCBI, ExPASy, EBI, Israel, Japan]
Kettenberger H.,
Armache K.J.,
Cramer P.;
"Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS.";
Mol. Cell 16:955-965(2004).
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[19]
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X-RAY CRYSTALLOGRAPHY (4.5 ANGSTROMS) OF THE RNA POL II CORE COMPLEX.
DOI=10.1126/science.1090838; PubMed=14963322 [NCBI, ExPASy, EBI, Israel, Japan]
Bushnell D.A.,
Westover K.D.,
Davis R.E.,
Kornberg R.D.;
"Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms.";
Science 303:983-988(2004).
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[20]
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X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX.
DOI=10.1074/jbc.M413038200; PubMed=15591044 [NCBI, ExPASy, EBI, Israel, Japan]
Armache K.J.,
Mitterweger S.,
Meinhart A.,
Cramer P.;
"Structures of complete RNA polymerase II and its subcomplex, Rpb4/7.";
J. Biol. Chem. 280:7131-7134(2005).
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[21]
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X-RAY CRYSTALLOGRAPHY (3.8 ANGSTROMS) OF THE RNA POL II COMPLEX IN COMPLEX WITH INHIBITING NON-CODING RNA.
DOI=10.1038/nsmb1032; PubMed=16341226 [NCBI, ExPASy, EBI, Israel, Japan]
Kettenberger H.,
Eisenfuhr A.,
Brueckner F.,
Theis M.,
Famulok M.,
Cramer P.;
"Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs.";
Nat. Struct. Mol. Biol. 13:44-48(2006).
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[22]
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X-RAY CRYSTALLOGRAPHY (4.15 ANGSTROMS) OF THE RNA POL II COMPLEX.
DOI=10.1016/j.str.2006.04.003; PubMed=16765890 [NCBI, ExPASy, EBI, Israel, Japan]
Meyer P.A.,
Ye P.,
Zhang M.,
Suh M.H.,
Fu J.;
"Phasing RNA polymerase II using intrinsically bound Zn atoms: an updated structural model.";
Structure 14:973-982(2006).
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