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UniProtKB/Swiss-Prot entry P08170


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LOX1_SOYBN
Primary accession number P08170
Secondary accession numbers None
Integrated into Swiss-Prot on August 1, 1988
Sequence was last modified on August 1, 1992 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 102)
Name and origin of the protein
Protein name Seed lipoxygenase-1
Synonyms L-1
EC 1.13.11.12
Gene name
Name: LOX1.1
Synonyms: LOX1
From
Glycine max (Soybean) [TaxID: 3847] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND PARTIAL PROTEIN SEQUENCE.
PubMed=3112136 [NCBI, ExPASy, EBI, Israel, Japan]
Shibata D., Steczko J., Dixon J.E., Hermodson M., Yazdanparast R., Axelrod B.;
"Primary structure of soybean lipoxygenase-1.";
J. Biol. Chem. 262:10080-10085(1987).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Bonminori;
TISSUE=Cotyledon;
Fukazawa C., Masayoshi M., Chikafusa F.;
Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 426-752.
DOI=10.1007/BF00020127; AGRICOLA=IND87003970
Start W.G., Ma Y., Polacco J.C., Hildebrand D.F., Freyer G.A., Altschuler M.;
"Two soybean seed lipoxygenase nulls accumulate reduced levels of lipoxygenase transcripts.";
Plant Mol. Biol. 7:11-23(1986).
[4]
SEQUENCE REVISION TO 479-482, AND MUTAGENESIS OF SOME HISTIDINE RESIDUES.
DOI=10.1021/bi00131a022; PubMed=1567851 [NCBI, ExPASy, EBI, Israel, Japan]
Steczko J., Donoho G.P., Clemens J.C., Dixon J.E., Axelrod B.;
"Conserved histidine residues in soybean lipoxygenase: functional consequences of their replacement.";
Biochemistry 31:4053-4057(1992).
[5]
MUTAGENESIS OF SOME HISTIDINE RESIDUES.
DOI=10.1016/0006-291X(92)90801-Q; PubMed=1497657 [NCBI, ExPASy, EBI, Israel, Japan]
Steczko J., Axelrod B.;
"Identification of the iron-binding histidine residues in soybean lipoxygenase L-1.";
Biochem. Biophys. Res. Commun. 186:686-689(1992).
[6]
ACTIVE SITE, AND IRON LIGANDS.
DOI=10.1021/bi00076a003; PubMed=8518276 [NCBI, ExPASy, EBI, Israel, Japan]
Minor W., Steczko J., Bolin J.T., Otwinowski Z., Axelrod B.;
"Crystallographic determination of the active site iron and its ligands in soybean lipoxygenase L-1.";
Biochemistry 32:6320-6323(1993).
[7]
X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) IN COMPLEX WITH IRON IONS.
PubMed=8502991 [NCBI, ExPASy, EBI, Israel, Japan]
Boyington J.C., Gaffney B.J., Amzel L.M.;
"The three-dimensional structure of an arachidonic acid 15-lipoxygenase.";
Science 260:1482-1486(1993).
[8]
X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS) IN COMPLEX WITH IRON IONS.
DOI=10.1021/bi960576u; PubMed=8718858 [NCBI, ExPASy, EBI, Israel, Japan]
Minor W., Steczko J., Stec B., Otwinowski Z., Bolin J.T., Walter R., Axelrod B.;
"Crystal structure of soybean lipoxygenase L-1 at 1.4-A resolution.";
Biochemistry 35:10687-10701(1996).
[9]
X-RAY CRYSTALLOGRAPHY (1.4 ANGSTROMS) OF WILD-TYPE AND MUTANTS GLN-495 AND GLN-697 IN COMPLEX WITH IRON IONS, AND MUTAGENESIS OF GLN-495 AND GLN-697.
PubMed=11412104 [NCBI, ExPASy, EBI, Israel, Japan]
Tomchick D.R., Phan P., Cymborowski M., Minor W., Holman T.R.;
"Structural and functional characterization of second-coordination sphere mutants of soybean lipoxygenase-1.";
Biochemistry 40:7509-7517(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
J02795; AAA33986.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X67304; CAA47717.1; ALT_FRAME; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S25064; DASYL2.
UniGene Gma.30722
3D structure databases
PDB
1F8N; X-ray; 1.40 A; A=1-839.[ExPASy / RCSB / EBI]
1FGM; X-ray; 1.90 A; A=1-839.[ExPASy / RCSB / EBI]
1FGO; X-ray; 1.62 A; A=1-839.[ExPASy / RCSB / EBI]
1FGQ; X-ray; 1.85 A; A=1-839.[ExPASy / RCSB / EBI]
1FGR; X-ray; 1.60 A; A=1-839.[ExPASy / RCSB / EBI]
1FGT; X-ray; 1.62 A; A=1-839.[ExPASy / RCSB / EBI]
1Y4K; X-ray; 1.95 A; A=1-839.[ExPASy / RCSB / EBI]
1YGE; X-ray; 1.40 A; A=1-839.[ExPASy / RCSB / EBI]
2SBL; X-ray; 2.60 A; A/B=1-839.[ExPASy / RCSB / EBI]
3BNB; X-ray; 1.45 A; A=1-839.[ExPASy / RCSB / EBI]
3BNC; X-ray; 1.65 A; A=1-839.[ExPASy / RCSB / EBI]
3BND; X-ray; 1.60 A; A=1-839.[ExPASy / RCSB / EBI]
3BNE; X-ray; 1.40 A; A=1-839.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1F8N; -.
1FGM; -.
1FGO; -.
1FGQ; -.
1FGR; -.
1FGT; -.
1Y4K; -.
1YGE; -.
2SBL; -.
3BNB; -.
3BNC; -.
3BND; -.
3BNE; -.
ModBase P08170.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from UniProtKB-KW).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0031408; Biological process: oxylipin biosynthetic process (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR000907; LipOase.
IPR013819; LipOase_C.
IPR001024; LipOase_LH2.
IPR001246; LipOase_pln.
Graphical view of domain structure.
Gene3D G3DSA:2.60.60.20; Lipase_LipOase; 1.
PANTHER PTHR11771; LipOase; 1.
Pfam PF00305; Lipoxygenase; 1.
PF01477; PLAT; 1.
Pfam graphical view of domain structure.
PRINTS PR00087; LIPOXYGENASE.
PR00468; PLTLPOXGNASE.
SMART SM00308; LH2; 1.
SMART graphical view of domain structure.
PROSITE PS00711; LIPOXYGENASE_1; 1.
PS00081; LIPOXYGENASE_2; 1.
PS51393; LIPOXYGENASE_3; 1.
PS50095; PLAT; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P08170.
ProtoNet P08170.
Other
LinkHub P08170; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cytoplasm; Dioxygenase; Direct protein sequencing; Fatty acid biosynthesis; Iron; Lipid synthesis; Metal-binding; Oxidoreductase; Oxylipin biosynthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   839  839     Seed lipoxygenase-1. PRO_0000220717
DOMAIN   16   145  130     PLAT. 
DOMAIN   148   839  692     Lipoxygenase. 
METAL   499   499        Iron; catalytic. 
METAL   504   504        Iron; catalytic. 
METAL   690   690        Iron; catalytic. 
METAL   694   694        Iron; catalytic. 
METAL   839   839        Iron; via carboxylate; catalytic. 
MUTAGEN   494   494        H->Q: 37% of wild-type activity. 
MUTAGEN   494   494        H->S: 8% of wild-type activity. 
MUTAGEN   495   495        Q->A: Reduces catalytic activity. 
MUTAGEN   495   495        Q->E: No effect on catalytic activity. 
MUTAGEN   499   499        H->Q: Inactive. 
MUTAGEN   504   504        H->Q,S: Inactive. 
MUTAGEN   517   517        H->Q: 33% of wild-type activity. 
MUTAGEN   522   522        H->Q: 1% of wild-type activity. 
MUTAGEN   531   531        H->Q: 20% of wild-type activity. 
MUTAGEN   690   690        H->Q: Inactive. 
MUTAGEN   697   697        Q->N,E: Reduces catalytic activity. 
CONFLICT   426   427        AK -> RN (in Ref. 3). 
CONFLICT   558   560        LPS -> AL (in Ref. 3). 
CONFLICT   572   574        KNW -> EL (in Ref. 3). 
CONFLICT   641   641        N -> P (in Ref. 3). 
CONFLICT   741   748        KLPTLISL -> SCRLSLAV (in Ref. 3). 
STRAND   7    16  10      
HELIX   32    35  4      
TURN   36    39  4      
STRAND   40    50  11      
STRAND   54    58  5      
STRAND   66    68  3      
STRAND   79    86  8      
HELIX   89    91  3      
STRAND   94   101  8      
STRAND   103   105  3      
STRAND   107   114  8      
STRAND   123   131  9      
HELIX   134   136  3      
STRAND   141   144  4      
HELIX   151   153  3      
HELIX   156   158  3      
HELIX   159   170  12      
TURN   195   197  3      
HELIX   199   201  3      
STRAND   206   212  7      
HELIX   242   244  3      
HELIX   251   253  3      
HELIX   255   257  3      
HELIX   258   264  7      
HELIX   266   275  10      
HELIX   286   290  5      
HELIX   291   293  3      
HELIX   301   307  7      
HELIX   313   315  3      
STRAND   321   326  6      
HELIX   331   333  3      
HELIX   339   341  3      
HELIX   343   352  10      
STRAND   353   355  3      
STRAND   364   366  3      
HELIX   373   376  4      
HELIX   385   387  3      
HELIX   395   400  6      
STRAND   404   408  5      
HELIX   410   421  12      
STRAND   430   437  8      
STRAND   443   451  9      
STRAND   465   467  3      
HELIX   473   496  24      
HELIX   497   503  7      
HELIX   504   517  14      
HELIX   523   528  6      
HELIX   529   532  4      
HELIX   535   545  11      
HELIX   552   556  5      
HELIX   560   562  3      
HELIX   563   571  9      
HELIX   576   579  4      
HELIX   581   587  7      
STRAND   590   593  4      
STRAND   600   605  6      
HELIX   609   628  20      
HELIX   629   631  3      
HELIX   636   640  5      
HELIX   643   654  12      
TURN   655   657  3      
HELIX   658   660  3      
HELIX   672   686  15      
HELIX   688   694  7      
HELIX   697   701  5      
TURN   704   706  3      
HELIX   721   728  8      
HELIX   730   737  8      
HELIX   741   754  14      
HELIX   776   801  26      
HELIX   803   805  3      
HELIX   806   809  4      
TURN   810   814  5      
STRAND   826   828  3      
STRAND   834   836  3      
Sequence information
Length: 839 AA [This is the length of the unprocessed precursor] Molecular weight: 94369 Da [This is the MW of the unprocessed precursor] CRC64: 1586250ACD3E34A4 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFSAGHKIKG TVVLMPKNEL EVNPDGSAVD NLNAFLGRSV SLQLISATKA DAHGKGKVGK 

        70         80         90        100        110        120 
DTFLEGINTS LPTLGAGESA FNIHFEWDGS MGIPGAFYIK NYMQVEFFLK SLTLEAISNQ 

       130        140        150        160        170        180 
GTIRFVCNSW VYNTKLYKSV RIFFANHTYV PSETPAPLVS YREEELKSLR GNGTGERKEY 

       190        200        210        220        230        240 
DRIYDYDVYN DLGNPDKSEK LARPVLGGSS TFPYPRRGRT GRGPTVTDPN TEKQGEVFYV 

       250        260        270        280        290        300 
PRDENLGHLK SKDALEIGTK SLSQIVQPAF ESAFDLKSTP IEFHSFQDVH DLYEGGIKLP 

       310        320        330        340        350        360 
RDVISTIIPL PVIKELYRTD GQHILKFPQP HVVQVSQSAW MTDEEFAREM IAGVNPCVIR 

       370        380        390        400        410        420 
GLEEFPPKSN LDPAIYGDQS SKITADSLDL DGYTMDEALG SRRLFMLDYH DIFMPYVRQI 

       430        440        450        460        470        480 
NQLNSAKTYA TRTILFLRED GTLKPVAIEL SLPHSAGDLS AAVSQVVLPA KEGVESTIWL 

       490        500        510        520        530        540 
LAKAYVIVND SCYHQLMSHW LNTHAAMEPF VIATHRHLSV LHPIYKLLTP HYRNNMNINA 

       550        560        570        580        590        600 
LARQSLINAN GIIETTFLPS KYSVEMSSAV YKNWVFTDQA LPADLIKRGV AIKDPSTPHG 

       610        620        630        640        650        660 
VRLLIEDYPY AADGLEIWAA IKTWVQEYVP LYYARDDDVK NDSELQHWWK EAVEKGHGDL 

       670        680        690        700        710        720 
KDKPWWPKLQ TLEDLVEVCL IIIWIASALH AAVNFGQYPY GGLIMNRPTA SRRLLPEKGT 

       730        740        750        760        770        780 
PEYEEMINNH EKAYLRTITS KLPTLISLSV IEILSTHASD EVYLGQRDNP HWTSDSKALQ 

       790        800        810        820        830 
AFQKFGNKLK EIEEKLVRRN NDPSLQGNRL GPVQLPYTLL YPSSEEGLTF RGIPNSISI 

P08170 in FASTA format

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View entry in raw text format (no links)
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