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UniProtKB/Swiss-Prot entry P06526


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TDT_BOVIN
Primary accession number P06526
Secondary accession number A4FUF8
Integrated into Swiss-Prot on January 1, 1988
Sequence was last modified on May 1, 2007 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 75)
Name and origin of the protein
Protein name DNA nucleotidylexotransferase
Synonyms EC 2.7.7.31
Terminal addition enzyme
Terminal deoxynucleotidyltransferase
TDT
Terminal transferase
Gene name
Name: DNTT
Synonyms: TDT
From
Bos taurus (Bovine) [TaxID: 9913] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Thymus;
DOI=10.1093/nar/14.14.5777; PubMed=3755527 [NCBI, ExPASy, EBI, Israel, Japan]
Koiwai O., Yokota T., Kageyama T., Hirose T., Yoshida S., Arai K.;
"Isolation and characterization of bovine and mouse terminal deoxynucleotidyltransferase cDNAs expressible in mammalian cells.";
Nucleic Acids Res. 14:5777-5792(1986).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Hereford;
TISSUE=Thymus;
NIH - Mammalian Gene Collection (MGC) project;
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-2.
DOI=10.1016/S0006-291X(87)80493-X; PubMed=3579900 [NCBI, ExPASy, EBI, Israel, Japan]
Koiwai O., Kaneda T., Morishita R.;
"Analysis of human terminal deoxynucleotidyl transferase cDNA expressible in mammalian cells.";
Biochem. Biophys. Res. Commun. 144:185-190(1987).
[4]
PROTEIN SEQUENCE OF 132-168; 169-176; 183-188; 191-219; 223-334; 336-415 AND 421-509.
DOI=10.1021/bi00428a045; PubMed=2713339 [NCBI, ExPASy, EBI, Israel, Japan]
Evans R.K., Beach C.M., Coleman M.S.;
"Photoaffinity labeling of terminal deoxynucleotidyl transferase. 2. Identification of peptides in the nucleotide binding domain.";
Biochemistry 28:713-720(1989).
[5]
PARTIAL PROTEIN SEQUENCE OF 210-238.
PubMed=3346221 [NCBI, ExPASy, EBI, Israel, Japan]
Pandey V.N., Modak M.J.;
"Biochemistry of terminal deoxynucleotidyltransferase. Affinity labeling and identification of the deoxynucleoside triphosphate binding domain of terminal deoxynucleotidyltransferase.";
J. Biol. Chem. 263:3744-3751(1988).
[6]
PROTEIN SEQUENCE OF 210-221 AND 224-238, AND ATP- AND DTTP-BINDING SITES CYS-216 AND CYS-224.
PubMed=2910867 [NCBI, ExPASy, EBI, Israel, Japan]
Pandey V.N., Modak M.J.;
"Biochemistry of terminal deoxynucleotidyltransferase. Identification and unity of ribo- and deoxyribonucleoside triphosphate binding site in terminal deoxynucleotidyltransferase.";
J. Biol. Chem. 264:867-871(1989).
[7]
PROTEIN SEQUENCE OF 306-326; 337-357 AND 483-506.
PubMed=6087320 [NCBI, ExPASy, EBI, Israel, Japan]
Peterson R.C., Cheung L.C., Mattaliano R.J., Chang L.M.S., Bollum F.J.;
"Molecular cloning of human terminal deoxynucleotidyltransferase.";
Proc. Natl. Acad. Sci. U.S.A. 81:4363-4367(1984).
Comments
  • FUNCTION: Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. One of the in vivo functions of this enzyme is the addition of nucleotides at the junction (N region) of rearranged Ig heavy chain and T-cell receptor gene segments during the maturation of B- and T-cells.
  • CATALYTIC ACTIVITY: Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).
  • COFACTOR: Magnesium.
  • SUBUNIT: Interacts with PRP19 and DNTTIP1. Forms a ternary complex with DNTTIP2 and core histone. Released from this complex by PCNA (By similarity).
  • SUBCELLULAR LOCATION: Nucleus.
  • SIMILARITY: Belongs to the DNA polymerase type-X family.
  • SIMILARITY: Contains 1 BRCT domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X04122; CAA27734.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC114820; AAI14821.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M26146; AAA87354.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A23595; A23595.
RefSeq NP_803461.1; -.
UniGene Bt.329
3D structure databases
HSSP P09838; 1JMS. [HSSP ENTRY / PDB]
SMR P06526; 21-125, 148-509.
ModBase P06526.
Ontologies
GO
GO:0005634; Cellular component: nucleus (inferred from electronic annotation from UniProtKB-KW).
GO:0000287; Molecular function: magnesium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0006304; Biological process: DNA modification (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR001357; BRCT.
IPR002054; DNA-dir_DNA_pol_X.
IPR010996; DNA-dir_DNA_pol_X_beta-like_N.
IPR001726; DNA_nucleotidylexotransferase.
IPR002934; Nucleotidyltransferase.
Graphical view of domain structure.
Gene3D G3DSA:1.10.150.110; DNA_pol_b_N-like; 1.
PANTHER PTHR11276:SF6; DNA_polXtrans; 1.
Pfam PF00533; BRCT; 1.
PF01909; NTP_transf_2; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000817; DNA_NT; 1.
PRINTS PR00869; DNAPOLX.
PR00871; DNAPOLXTDT.
SMART SM00292; BRCT; 1.
SM00483; POLXc; 1.
SMART graphical view of domain structure.
PROSITE PS50172; BRCT; 1.
PS00522; DNA_POLYMERASE_X; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P06526.
ProtoNet P06526.
Genome annotation databases
Ensembl ENSBTAG00000020427; Bos taurus. [Contig view]
GeneID 281120; -.
KEGG bta:281120; -.
Phylogenomic databases
HOVERGEN P06526; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Direct protein sequencing; Magnesium; Metal-binding; Nucleotidyltransferase; Nucleus; Terminal addition; Transferase.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   509  509     DNA nucleotidylexotransferase. PRO_0000218790
DOMAIN   27   124  98     BRCT. 
REGION   151   509  359     Mediates interaction with DNTTIP2 (By similarity). 
REGION   336   345  10     Involved in ssDNA binding (By similarity). 
METAL   253   253        Sodium; via carbonyl oxygen (By similarity). 
METAL   255   255        Sodium; via carbonyl oxygen (By similarity). 
METAL   343   343        Magnesium (By similarity). 
METAL   345   345        Magnesium (By similarity). 
METAL   433   433        Magnesium (By similarity). 
Sequence information
Length: 509 AA [This is the length of the unprocessed precursor] Molecular weight: 58296 Da [This is the MW of the unprocessed precursor] CRC64: EE5262617BA5D207 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MDPLCTASSG PRKKRPRQVG ASMASPPHDI KFQNLVLFIL EKKMGTTRRN FLMELARRKG 

        70         80         90        100        110        120 
FRVENELSDS VTHIVAENNS GSEVLEWLQV QNIRASSQLE LLDVSWLIES MGAGKPVEIT 

       130        140        150        160        170        180 
GKHQLVVRTD YSATPNPGFQ KTPPLAVKKI SQYACQRKTT LNNYNHIFTD AFEILAENSE 

       190        200        210        220        230        240 
FKENEVSYVT FMRAASVLKS LPFTIISMKD TEGIPCLGDK VKCIIEEIIE DGESSEVKAV 

       250        260        270        280        290        300 
LNDERYQSFK LFTSVFGVGL KTSEKWFRMG FRSLSKIMSD KTLKFTKMQK AGFLYYEDLV 

       310        320        330        340        350        360 
SCVTRAEAEA VGVLVKEAVW AFLPDAFVTM TGGFRRGKKI GHDVDFLITS PGSAEDEEQL 

       370        380        390        400        410        420 
LPKVINLWEK KGLLLYYDLV ESTFEKFKLP SRQVDTLDHF QKCFLILKLH HQRVDSSKSN 

       430        440        450        460        470        480 
QQEGKTWKAI RVDLVMCPYE NRAFALLGWT GSRQFERDIR RYATHERKMM LDNHALYDKT 

       490        500 
KRVFLKAESE EEIFAHLGLD YIEPWERNA 

P06526 in FASTA format

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