[1]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND PARTIAL PROTEIN SEQUENCE.
STRAIN=K12;
PubMed=2987251 [NCBI, ExPASy, EBI, Israel, Japan]
Nakabeppu Y.,
Kondo H.,
Kawabata S.,
Iwanaga S.,
Sekiguchi M.;
"Purification and structure of the intact Ada regulatory protein of Escherichia coli K12, O6-methylguanine-DNA methyltransferase.";
J. Biol. Chem. 260:7281-7288(1985).
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[2]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=B;
PubMed=3887409 [NCBI, ExPASy, EBI, Israel, Japan]
Demple B.,
Sedgwick B.,
Robins P.,
Totty N.,
Waterfield M.D.,
Lindahl T.;
"Active site and complete sequence of the suicidal methyltransferase that counters alkylation mutagenesis.";
Proc. Natl. Acad. Sci. U.S.A. 82:2688-2692(1985).
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[3]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / BHB2600;
Richterich P.,
Lakey N.,
Gryan G.,
Jaehn L.,
Mintz L.,
Robison K.,
Church G.M.;
"Automated multiplex sequencing of the E.coli genome.";
Submitted (OCT-1993) to the EMBL/GenBank/DDBJ databases.
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[4]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
DOI=10.1093/dnares/3.6.379; PubMed=9097040 [NCBI, ExPASy, EBI, Israel, Japan]
Itoh T.,
Aiba H.,
Baba T.,
Fujita K.,
Hayashi K.,
Inada T.,
Isono K.,
Kasai H.,
Kimura S.,
Kitakawa M.,
Kitagawa M.,
Makino K.,
Miki T.,
Mizobuchi K.,
Mori H.,
Mori T.,
Motomura K.,
Nakade S.,
Nakamura Y., ![]()
Nashimoto H.,
Nishio Y.,
Oshima T.,
Saito N.,
Sampei G.,
Seki Y.,
Sivasundaram S.,
Tagami H.,
Takeda J.,
Takemoto K.,
Wada C.,
Yamamoto Y.,
Horiuchi T.;
"A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map.";
DNA Res. 3:379-392(1996).
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[5]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
DOI=10.1126/science.277.5331.1453; PubMed=9278503 [NCBI, ExPASy, EBI, Israel, Japan]
Blattner F.R.,
Plunkett G. III,
Bloch C.A.,
Perna N.T.,
Burland V.,
Riley M.,
Collado-Vides J.,
Glasner J.D.,
Rode C.K.,
Mayhew G.F.,
Gregor J.,
Davis N.W.,
Kirkpatrick H.A.,
Goeden M.A.,
Rose D.J.,
Mau B.,
Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1474(1997).
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[6]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
DOI=10.1038/msb4100049; PubMed=16738553 [NCBI, ExPASy, EBI, Israel, Japan]
Hayashi K.,
Morooka N.,
Yamamoto Y.,
Fujita K.,
Isono K.,
Choi S.,
Ohtsubo E.,
Baba T.,
Wanner B.L.,
Mori H.,
Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
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[7]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-49.
STRAIN=K12;
PubMed=2982792 [NCBI, ExPASy, EBI, Israel, Japan]
Lemotte P.K.,
Walker G.C.;
"Induction and autoregulation of ada, a positively acting element regulating the response of Escherichia coli K-12 to methylating agents.";
J. Bacteriol. 161:888-895(1985).
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[8]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 287-354.
PubMed=3536913 [NCBI, ExPASy, EBI, Israel, Japan]
Kondo H.,
Nakabeppu Y.,
Kataoka H.,
Kuhara S.,
Kawabata S.,
Sekiguchi M.;
"Structure and expression of the alkB gene of Escherichia coli related to the repair of alkylated DNA.";
J. Biol. Chem. 261:15772-15777(1986).
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[9]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-29.
DOI=10.1016/0092-8674(86)90396-X; PubMed=3009022 [NCBI, ExPASy, EBI, Israel, Japan]
Teo I.,
Sedgwick B.,
Kilpatrick M.W.,
McCarthy T.V.,
Lindahl T.;
"The intracellular signal for induction of resistance to alkylating agents in E. coli.";
Cell 45:315-324(1986).
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[10]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-27.
PubMed=3529081 [NCBI, ExPASy, EBI, Israel, Japan]
Nakabeppu Y.,
Sekiguchi M.;
"Regulatory mechanisms for induction of synthesis of repair enzymes in response to alkylating agents: ada protein acts as a transcriptional regulator.";
Proc. Natl. Acad. Sci. U.S.A. 83:6297-6301(1986).
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[11]
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ZINC-BINDING.
DOI=10.1021/bi00134a002; PubMed=1581309 [NCBI, ExPASy, EBI, Israel, Japan]
Myers L.C.,
Terranova M.P.,
Nash H.M.,
Markus M.A.,
Verdine G.L.;
"Zinc binding by the methylation signaling domain of the Escherichia coli Ada protein.";
Biochemistry 31:4541-4547(1992).
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[12]
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CHARACTERIZATION.
DOI=10.1093/nar/22.9.1613; PubMed=8202360 [NCBI, ExPASy, EBI, Israel, Japan]
Liem L.-K.,
Lim A.,
Li B.F.L.;
"Specificities of human, rat and E. coli O6-methylguanine-DNA methyltransferases towards the repair of O6-methyl and O6-ethylguanine in DNA.";
Nucleic Acids Res. 22:1613-1619(1994).
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[13]
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STRUCTURE BY NMR OF 1-129.
DOI=10.1016/0014-5793(93)81351-Y; PubMed=8500619 [NCBI, ExPASy, EBI, Israel, Japan]
Sakashita H.,
Sakuma T.,
Ohkubo T.,
Kainosho M.,
Sakumi K.,
Sekiguchi M.,
Morikawa K.;
"Folding topology and DNA binding of the N-terminal fragment of Ada protein.";
FEBS Lett. 323:252-256(1993).
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[14]
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STRUCTURE BY NMR OF 1-92 IN COMPLEX WITH ZINC IONS.
PubMed=8395079 [NCBI, ExPASy, EBI, Israel, Japan]
Myers L.C.,
Terranova M.P.,
Ferentz A.E.,
Wagner G.,
Verdine G.L.;
"Repair of DNA methylphosphotriesters through a metalloactivated cysteine nucleophile.";
Science 261:1164-1167(1993).
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[15]
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X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 175-354.
STRAIN=B;
PubMed=8156986 [NCBI, ExPASy, EBI, Israel, Japan]
Moore M.H.,
Gulbis J.M.,
Dodson E.J.,
Demple B.,
Moody P.C.E.;
"Crystal structure of a suicidal DNA repair protein: the Ada O6-methylguanine-DNA methyltransferase from E. coli.";
EMBO J. 13:1495-1501(1994).
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[16]
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STRUCTURE BY NMR OF 1-92 IN COMPLEX WITH ZINC IONS, AND INTERACTION WITH DNA.
DOI=10.1021/bi002109p; PubMed=11284682 [NCBI, ExPASy, EBI, Israel, Japan]
Lin Y.,
Doetsch V.,
Wintner T.,
Peariso K.,
Myers L.C.,
Penner-Hahn J.E.,
Verdine G.L.,
Wagner G.;
"Structural basis for the functional switch of the E. coli Ada protein.";
Biochemistry 40:4261-4271(2001).
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[17]
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X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS) OF 9-139 IN COMPLEX WITH DNA AND ZINC IONS, STRUCTURE BY NMR OF 9-139, MASS SPECTROMETRY, AND ACTIVE SITE.
DOI=10.1016/j.molcel.2005.08.013; PubMed=16209950 [NCBI, ExPASy, EBI, Israel, Japan]
He C.,
Hus J.-C.,
Sun L.J.,
Zhou P.,
Norman D.P.G.,
Doetsch V.,
Wei H.,
Gross J.D.,
Lane W.S.,
Wagner G.,
Verdine G.L.;
"A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada.";
Mol. Cell 20:117-129(2005).
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[18]
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STRUCTURE BY NMR OF 1-146 IN COMPLEX WITH ZINC IONS, MASS SPECTROMETRY, AND ACTIVE SITE.
DOI=10.1110/ps.051786306; PubMed=16452614 [NCBI, ExPASy, EBI, Israel, Japan]
Takinowaki H.,
Matsuda Y.,
Yoshida T.,
Kobayashi Y.,
Ohkubo T.;
"The solution structure of the methylated form of the N-terminal 16-kDa domain of Escherichia coli Ada protein.";
Protein Sci. 15:487-497(2006).
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