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UniProtKB/Swiss-Prot entry P04718


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name RBL2_RHORU
Primary accession number P04718
Secondary accession numbers P19365 P72313
Integrated into Swiss-Prot on August 13, 1987
Sequence was last modified on August 13, 1987 (Sequence version 1)
Annotations were last modified on    November 4, 2008 (Entry version 80)
Name and origin of the protein
Protein name Ribulose bisphosphate carboxylase
Synonyms RuBisCO
EC 4.1.1.39
Gene name
Name: cbbM
Synonyms: cbbL2, rbpL
From
Rhodospirillum rubrum [TaxID: 1085] 
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Nargang F., McIntosh L., Somerville C.R.;
"Nucleotide sequence of the ribulosebisphosphate carboxylase gene from Rhodospirillum rubrum.";
Mol. Gen. Genet. 193:220-224(1984).
[2]
PROTEIN SEQUENCE OF 314-337.
DOI=10.1021/bi00275a028; PubMed=6404301 [NCBI, ExPASy, EBI, Israel, Japan]
Fraij B., Hartman F.C.;
"Isolation and sequencing of an active-site peptide from Rhodospirillum rubrum ribulosebisphosphate carboxylase/oxygenase after affinity labeling with 2-[(bromoacetyl)amino]pentitol 1,5-bisphosphate.";
Biochemistry 22:1515-1520(1983).
[3]
X-RAY CRYSTALLOGRAPHY (2.9 ANGSTROMS).
PubMed=16453738 [NCBI, ExPASy, EBI, Israel, Japan]
Schneider G., Lindqvist Y., Braenden C.-I., Lorimer G.;
"Three-dimensional structure of ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum at 2.9-A resolution.";
EMBO J. 5:3409-3415(1986).
[4]
X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS).
Andersson I., Knight S., Schneider G., Lindqvist Y., Lundqvist T., Braenden C.-I., Lorimer G.H.;
"Crystal structure of the active site of ribulose-bisphosphate carboxylase.";
Nature 337:229-234(1989).
[5]
X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS).
DOI=10.1016/0022-2836(90)90088-4; PubMed=2107319 [NCBI, ExPASy, EBI, Israel, Japan]
Schneider G., Lindqvist Y., Lundqvist T.;
"Crystallographic refinement and structure of ribulose-1,5-bisphosphate carboxylase from Rhodospirillum rubrum at 1.7-A resolution.";
J. Mol. Biol. 211:989-1008(1990).
[6]
X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS), COFACTOR, AND SUBUNIT.
DOI=10.1021/bi00218a004; PubMed=1899197 [NCBI, ExPASy, EBI, Israel, Japan]
Lundqvist T., Schneider G.;
"Crystal structure of the ternary complex of ribulose-1,5-bisphosphate carboxylase, Mg(II), and activator CO2 at 2.3-A resolution.";
Biochemistry 30:904-908(1991).
Comments
  • FUNCTION: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.
  • CATALYTIC ACTIVITY: 2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
  • CATALYTIC ACTIVITY: 3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.
  • COFACTOR: Binds 1 magnesium ion per subunit.
  • SUBUNIT: Homodimer.
  • MISCELLANEOUS: The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In contrast to form I RuBisCO, the form II RuBisCO are composed solely of large subunits (By similarity).
  • SIMILARITY: Belongs to the RuBisCO large chain family. Type II subfamily.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X00286; CAA25080.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S07295; S07295.
3D structure databases
PDB
1RBA; X-ray; 2.60 A; A/B=1-466.[ExPASy / RCSB / EBI]
1RUS; X-ray; 2.90 A; A/B=1-466.[ExPASy / RCSB / EBI]
2RUS; X-ray; 2.30 A; A/B=1-466.[ExPASy / RCSB / EBI]
5RUB; X-ray; 1.70 A; A/B=1-466.[ExPASy / RCSB / EBI]
9RUB; X-ray; 2.60 A; A/B=1-466.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1RBA; -.
1RUS; -.
2RUS; -.
5RUB; -.
9RUB; -.
ModBase P04718.
Enzyme and pathway databases
BioCyc MetaCyc:MON-13280; -.
Ontologies
GO
GO:0000287; Molecular function: magnesium ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004497; Molecular function: monooxygenase activity (inferred from electronic annotation from UniProtKB-KW).
GO:0016984; Molecular function: ribulose-bisphosphate carboxylase activity (inferred from electronic annotation from HAMAP).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
GO:0019253; Biological process: reductive pentose-phosphate cycle (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
HAMAP MF_01339; -; 1.
PBIL [Tree]
InterPro IPR000685; RuBisCO_lsu_C.
IPR017443; RuBisCO_lsu_fd_N.
IPR017444; RuBisCO_lsu_N.
Graphical view of domain structure.
Gene3D G3DSA:3.20.20.110; RuBisCO_large; 1.
G3DSA:3.30.70.150; RuBisCO_large; 1.
Pfam PF00016; RuBisCO_large; 1.
PF02788; RuBisCO_large_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00157; RUBISCO_LARGE; 1.
BLOCKS P04718.
ProtoNet P04718.
Other
LinkHub P04718; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Calvin cycle; Carbon dioxide fixation; Direct protein sequencing; Lyase; Magnesium; Metal-binding; Monooxygenase; Oxidoreductase; Photosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   466  466     Ribulose bisphosphate carboxylase. PRO_0000062666
ACT_SITE   166   166        Proton acceptor. 
ACT_SITE   287   287        Proton acceptor. 
METAL   191   191        Magnesium; via carbamate group. 
METAL   193   193        Magnesium. 
METAL   194   194        Magnesium. 
BINDING   111   111        Substrate; in homodimeric partner. 
BINDING   168   168        Substrate. 
BINDING   288   288        Substrate. 
BINDING   321   321        Substrate. 
BINDING   368   368        Substrate. 
SITE   329   329  1     Transition state stabilizer. 
MOD_RES   191   191        N6-carboxylysine. 
TURN   4     6  3      
HELIX   14    19  6      
STRAND   23    32  10      
STRAND   34    36  3      
HELIX   38    48  11      
TURN   49    51  3      
STRAND   70    75  6      
TURN   76    79  4      
STRAND   80    86  7      
HELIX   87    89  3      
TURN   94    96  3      
HELIX   101   108  8      
STRAND   118   127  10      
HELIX   130   133  4      
HELIX   143   150  8      
STRAND   154   156  3      
STRAND   160   164  5      
STRAND   166   169  4      
HELIX   173   184  12      
STRAND   188   191  4      
HELIX   204   222  19      
STRAND   227   231  5      
HELIX   237   251  15      
HELIX   252   257  6      
STRAND   258   262  5      
TURN   264   267  4      
HELIX   269   278  10      
STRAND   284   286  3      
HELIX   291   293  3      
STRAND   301   303  3      
HELIX   305   315  11      
STRAND   318   323  6      
HELIX   337   344  8      
STRAND   346   349  4      
STRAND   354   356  3      
STRAND   364   369  6      
TURN   373   375  3      
HELIX   376   383  8      
STRAND   388   392  5      
TURN   394   397  4      
HELIX   403   419  17      
HELIX   423   428  6      
HELIX   431   439  9      
HELIX   441   447  7      
HELIX   449   451  3      
HELIX   452   455  4      
Sequence information
Length: 466 AA [This is the length of the unprocessed precursor] Molecular weight: 50504 Da [This is the MW of the unprocessed precursor] CRC64: 37D8C0076CAF7D54 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MDQSSRYVNL ALKEEDLIAG GEHVLCAYIM KPKAGYGYVA TAAHFAAESS TGTNVEVCTT 

        70         80         90        100        110        120 
DDFTRGVDAL VYEVDEAREL TKIAYPVALF HRNITDGKAM IASFLTLTMG NNQGMGDVEY 

       130        140        150        160        170        180 
AKMHDFYVPE AYRALFDGPS VNISALWKVL GRPEVDGGLV VGTIIKPKLG LRPKPFAEAC 

       190        200        210        220        230        240 
HAFWLGGDFI KNDEPQGNQP FAPLRDTIAL VADAMRRAQD ETGEAKLFSA NITADDPFEI 

       250        260        270        280        290        300 
IARGEYVLET FGENASHVAL LVDGYVAGAA AITTARRRFP DNFLHYHRAG HGAVTSPQSK 

       310        320        330        340        350        360 
RGYTAFVHCK MARLQGASGI HTGTMGFGKM EGESSDRAIA YMLTQDEAQG PFYRQSWGGM 

       370        380        390        400        410        420 
KACTPIISGG MNALRMPGFF ENLGNANVIL TAGGGAFGHI DGPVAGARSL RQAWQAWRDG 

       430        440        450        460 
VPVLDYAREH KELARAFESF PGDADQIYPG WRKALGVEDT RSALPA 

P04718 in FASTA format

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